View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6475_low_1 (Length: 519)
Name: NF6475_low_1
Description: NF6475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6475_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 31592346 - 31591831
Alignment:
| Q |
1 |
atgaaaaccttaccacaacagaaaaaataatttatatatgatatgaaatatatttgaggattgccgcataaatgtgcagtaaaatttctcaatacaacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31592346 |
atgaaaaccttaccacaacagaaaaaatattttatatatgatatgaaatatatttgaggattgccgcataaatgcgcagtaaaatttctcaatacaacca |
31592247 |
T |
|
| Q |
101 |
gataggtaattcttaaaactttcatgatttagcggggagaaaaggcaggcataaaaagttacacttttccaaatttaggtttgtttttaaactattgact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
31592246 |
gataggtaattcttaaaactttcatgatttagcggggagaaatggcaggcataaaaagttacactttttcaaatttaggtttgtttctaaactattgact |
31592147 |
T |
|
| Q |
201 |
cagaataaaatgtatcttaacttaacatgtaatcgaggactcaagtttcccgtcaaaatttggtcatacaattttcactacatgccaacttctttgatcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
31592146 |
cagaataaaatgtatcttaacttaacatgtaatcgaggactcgagtttcccgtcaaaatttggtcatacaattttcactaaatgccaacttctttgctcc |
31592047 |
T |
|
| Q |
301 |
aaaaattaaataatcagaaaatcatactaaagtatacattgaaatgaagccaattttgaaagctaacaaaatgaaaataacattaacccagccatataaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31592046 |
aaaaattaaataatcagaaaatcatactaaagtatacattgaaatgaagtcaattttgaaagctaacaaaatgaaaataacattaacccagccatataaa |
31591947 |
T |
|
| Q |
401 |
gtataaaccatcagtctagtccagtaggcaagaacctaaaaataaacattgacatatttttaggcataaatatagtaaaaagcaactaaactgatgtaaa |
500 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |
|
|
| T |
31591946 |
gtataaaccatcagtctagtacagtaggcaagaacctaaaaataaacattgacatatttttaggcataaatatagtaaatagcaactaacctggggtaaa |
31591847 |
T |
|
| Q |
501 |
ctctctttaatctcat |
516 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31591846 |
ctctctttaatctcat |
31591831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University