View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6475_low_2 (Length: 497)
Name: NF6475_low_2
Description: NF6475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6475_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 21 - 487
Target Start/End: Complemental strand, 7806089 - 7805604
Alignment:
| Q |
21 |
tgaagtaaagagaattttaagaagcttcaaaaacaaattgcgcacactcgttctcaggtagatgcatcaaatgtgaattattttaatgcattgaagaaac |
120 |
Q |
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| T |
7806089 |
tgaagtaaagagaattttaagaagcttcaaaaacaaattgcgcacactcgttctcaggtagatgcatcaaatgtgaattattttaatgcattgaagaaac |
7805990 |
T |
|
| Q |
121 |
atattgctacgctactagtaaaagatgatatgttctgaagacaaagatgat-------------------atgtggctgcaacttctaatgaggaaagtc |
201 |
Q |
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| T |
7805989 |
atattgctactctactagtaaaagatgatatgttctgaagacaaaggtgattcgaatacaatattctttcatgtggctgcaacttctaatgaggaaagtc |
7805890 |
T |
|
| Q |
202 |
aaccaaattcattttctagatgatgagaatggagtgatgtgtagatctgctgatgctattaacattgatcaatactactttgcagattttattccaaaag |
301 |
Q |
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| T |
7805889 |
aaccaaattcattttctagatgatgagaatggagtgatgtgtagatctgctgatgctattaacattgctcaatactactttgcagattttattccaaaag |
7805790 |
T |
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| Q |
302 |
aagcgaagcatagctcgcatgatttggtcgtaaatgcaatgccaccttctataacaaatgatgacaatgaagttttgactgctcgtattcgttttgatga |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7805789 |
aagcgaagcatagctcgcatgatttggtcgtaaatgcaatgccaccttctataacaaattatgacaatgaagttttgactgctcgtattcgttttgatga |
7805690 |
T |
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| Q |
402 |
attctatagagattgatgtgtccaaatccgggtttttatcaacactatatgtgtggtcatgaaatatttgtaataggttgcctttg |
487 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7805689 |
attctatacaggttgatgtgtccaaatccgggtttttatcaacactctatgtgtggtcatgaaatatttgtaataggttgcctttg |
7805604 |
T |
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