View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6475_low_3 (Length: 350)
Name: NF6475_low_3
Description: NF6475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6475_low_3 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 143 - 350
Target Start/End: Original strand, 17751243 - 17751450
Alignment:
| Q |
143 |
cctaacaacatcagctagccatcatcttcttgaactcctcaaagttaacttttccatcaccgtcagcatcgacgttgcttatcattatctcgcagtcact |
242 |
Q |
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| T |
17751243 |
cctaacaacatcagctagccatcatcttcttgaactcctcaaagttaacatttccatcaccgtcagcatcgacgttgcttatcattatctcgcagtcact |
17751342 |
T |
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| Q |
243 |
gagggaacactcctcaccaagtttgttaagaacgatgtgtagttcattgacagagatgagaccgtccttgtcaaggtcgtaaaggtcaaaggcatcacga |
342 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17751343 |
gagggaacacttctcaccaagtttgttaagaacgatgtgcagttcattgacagagatgagaccgtccttgtcaaggtcgtaaaggtcaaaagcatcacga |
17751442 |
T |
|
| Q |
343 |
atctcttc |
350 |
Q |
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|||||||| |
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| T |
17751443 |
atctcttc |
17751450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 142 - 338
Target Start/End: Complemental strand, 17713677 - 17713481
Alignment:
| Q |
142 |
ccctaacaacatcagctagccatcatcttcttgaactcctcaaagttaacttttccatcaccgtcagcatcgacgttgcttatcattatctcgcagtcac |
241 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || || || || || |||||||||||| ||| || |||| |
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| T |
17713677 |
ccctaacaacatcagcgagccatcatcttcttgaactcctcaaagttaacttttccatctccatccgcgtcaaccttgcttatcattctctgacaatcac |
17713578 |
T |
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| Q |
242 |
tgagggaacactcctcaccaagtttgttaagaacgatgtgtagttcattgacagagatgagaccgtccttgtcaaggtcgtaaaggtcaaaggcatc |
338 |
Q |
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| T |
17713577 |
tgagggagcacttctcaccaagtttgttaagaacgatgtgcagttcattgggagagatgagaccgtccttgtcaaggtcgtaaaggtcgaaagcatc |
17713481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 142 - 328
Target Start/End: Complemental strand, 17711632 - 17711446
Alignment:
| Q |
142 |
ccctaacaacatcagctagccatcatcttcttgaactcctcaaagttaacttttccatcaccgtcagcatcgacgttgcttatcattatctcgcagtcac |
241 |
Q |
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|||||||| ||||||| || |||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||| || |||| |
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| T |
17711632 |
ccctaacagcatcagcgagtcatcatcttcttgaactcatcaaagttaacttttccatcaccgtcggcatcaacgttgcttatcattctctgacaatcac |
17711533 |
T |
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| Q |
242 |
tgagggaacactcctcaccaagtttgttaagaacgatgtgtagttcattgacagagatgagaccgtccttgtcaaggtcgtaaaggt |
328 |
Q |
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| T |
17711532 |
cgagggagcacttctcaccgagtttattaagaacgatatgcagttctgtgggagagatgacaccgtctttgtcgaggtcgtaaaggt |
17711446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 17751163 - 17751213
Alignment:
| Q |
19 |
acagagaatgtttgaagagaaaagatcataaaaagaagatattaacaaaac |
69 |
Q |
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| T |
17751163 |
acagagaatgtttgaagagaaaagatcataaaaagaagatattaacaaaac |
17751213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 17713753 - 17713679
Alignment:
| Q |
19 |
acagagaatgtttgaagagaaaagatcataaaaagaagatattaacaaaactaattataccttcttaatcactaa |
93 |
Q |
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|||||||| ||||| | ||||||||||| ||||||||||||||||||||||| | || ||||||||||||||| |
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| T |
17713753 |
acagagaacgtttgcatagaaaagatcaataaaagaagatattaacaaaactagctctatcttcttaatcactaa |
17713679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 159 - 343
Target Start/End: Original strand, 1892453 - 1892637
Alignment:
| Q |
159 |
agccatcatcttcttgaactcctcaaagttaacttttccatcaccgtcagcatcgacgttgcttatcattatctcgcagtcactgagggaacactcctca |
258 |
Q |
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|||| ||||||| |||||||||||||||||||| |||||| ||||||| |||| | |||||||||||| ||| ||||||||| ||||| |||| ||| |
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| T |
1892453 |
agccgtcatcttgttgaactcctcaaagttaacgtttccaccaccgtctacatcatcattgcttatcattctctggcagtcactaagggagcacttctct |
1892552 |
T |
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| Q |
259 |
ccaagtttgttaagaacgatgtgtagttcattgacagagatgagaccgtccttgtcaaggtcgtaaaggtcaaaggcatcacgaa |
343 |
Q |
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| T |
1892553 |
cgaagtttattaagaaaaatgtgcagttcttttggagagatgagaccgtccttgtcgaggtcgtaaaggtcaaaagcatcacgaa |
1892637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 159 - 338
Target Start/End: Complemental strand, 1893371 - 1893192
Alignment:
| Q |
159 |
agccatcatcttcttgaactcctcaaagttaacttttccatcaccgtcagcatcgacgttgcttatcattatctcgcagtcactgagggaacactcctca |
258 |
Q |
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||||||| ||||||||| |||||||||||||| |||| |||| |||||||| |||||||||| |||| ||| || ||| || |||| |||| |||| |
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| T |
1893371 |
agccatcgacttcttgaattcctcaaagttaacgtttctgtcacagtcagcatttacgttgcttaccattctctgacaatcattgtgggagcacttctca |
1893272 |
T |
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| Q |
259 |
ccaagtttgttaagaacgatgtgtagttcattgacagagatgagaccgtccttgtcaaggtcgtaaaggtcaaaggcatc |
338 |
Q |
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| T |
1893271 |
ccaagtttattaagaatgatgtgtagttcatttggagagatgagaccgtccttgtcgaggttgtaaaggtcgaaagcatc |
1893192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 33925886 - 33925939
Alignment:
| Q |
159 |
agccatcatcttcttgaactcctcaaagttaacttttccatcaccgtcagcatc |
212 |
Q |
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| T |
33925886 |
agccatcatcttcttgaactcttcgaagttcacatttccatcaccgtcaacatc |
33925939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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