View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6476_high_3 (Length: 418)
Name: NF6476_high_3
Description: NF6476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6476_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 5870899 - 5871297
Alignment:
| Q |
1 |
tacaactctttgaagaacctcattcctgacctagcaaatgctggaattacacatgtttggcttcctcctccatctcaaagtgttggccctcaaggtagca |
100 |
Q |
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| T |
5870899 |
tacaactctttgaagaacctcattcctgacctagcaaatgctggaattacacatgtttggcttcctcctccatctcaaagtgttggtcctcaaggtagca |
5870998 |
T |
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| Q |
101 |
catttttgtacctgctttaatggatgtgaatatgatgatcattatttgtcattcattttccaaacatatgattctctaattattgtactagtaattgata |
200 |
Q |
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| T |
5870999 |
catttttgtacctgctttaatggatgtgaatatgatgatcattatttgtcattcattttccaaacatatgattctctaattattgtactagtaattgata |
5871098 |
T |
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| Q |
201 |
tgtaatcatgttaggatcaattaggttttatgtgtaattactttctttgtatgtttgtctccaatactattatagaaatataaataggagcacatacttt |
300 |
Q |
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| T |
5871099 |
tgtaatcatgttaggatcaattaggttttatgtgtaattactttctttgtatgtttgtctccaatactataatagaaatataaataggagcacatacttt |
5871198 |
T |
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| Q |
301 |
attcatttgaaccaggatttctgttcttacattatataatattgttaannnnnnnaatccaggatatcttccaggaagactttatgatcttgatgcatc |
399 |
Q |
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| T |
5871199 |
attcatttgaaccaggatttctgttcttacattatataatattgttaatttttttaatccaggatatcttccaggaagactttatgatcttgatgcatc |
5871297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 9466075 - 9466043
Alignment:
| Q |
192 |
taattgatatgtaatcatgttaggatcaattag |
224 |
Q |
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| T |
9466075 |
taattgatatgtaatcatgttcggatcaattag |
9466043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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