View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6476_low_2 (Length: 443)
Name: NF6476_low_2
Description: NF6476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6476_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 147 - 433
Target Start/End: Original strand, 43527735 - 43528023
Alignment:
| Q |
147 |
attcacatttgcatttccttctcaccgtaaacgtcattaacatattcaagtggagaaatgccaacgaataatttgtccatatgttattatcaggtttctt |
246 |
Q |
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| T |
43527735 |
attcacatttgcatttccttctcaccgtaaacgtcattaacatattcaagtggagaaatggcaacgaataatttgtccatatgttattatcaagtttctt |
43527834 |
T |
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| Q |
247 |
tcgtcgcacttcctcactcttaatggtgggtaacttcttcct--gttactgccatcaacaatggtcgcatatatgtgtctcatcaagcacacactagcta |
344 |
Q |
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| T |
43527835 |
tcgtcccacttcctcactcttaacggtgggtaacttcttcctctgttactgccatcaacaatggtcgcatatatgtgtctcatcaagcacacactagcta |
43527934 |
T |
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| Q |
345 |
ggactctaaaatttaccacctcccatgcatacattgaaattgacttgaacactgaagctatatatgcaaataccccaaccctacctatg |
433 |
Q |
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| T |
43527935 |
ggactctaaaatttaccacctcccatgcatacattgaaattgacttgaacactgaagctatatatgcaaataccccaaccctacctatg |
43528023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 43527568 - 43527670
Alignment:
| Q |
34 |
cgagaggcatggtattttatactactctatgtgcccaactatttattgaaactactaggtccatttagattaatctagtactctagttttgacctaaaca |
133 |
Q |
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| T |
43527568 |
cgagaggcatggtattttatactactctatgtgcccaactatttattgaaactactaggtccatttagattaatctagtactctagttttgacctaaaca |
43527667 |
T |
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| Q |
134 |
ctc |
136 |
Q |
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| T |
43527668 |
ctc |
43527670 |
T |
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