View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6477_high_2 (Length: 664)
Name: NF6477_high_2
Description: NF6477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6477_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 190 - 650
Target Start/End: Complemental strand, 5233185 - 5232721
Alignment:
| Q |
190 |
attgttgatgaaatatcttaatttttt---gtcaaaaaa-tactttgcaatctctttctagatttaacaaaagtttaaaattatgaccccccaatgacca |
285 |
Q |
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| T |
5233185 |
attgttgatgaaatagcttaattttgtttggtcaaaaaaatactttgcaatctctttctagatttaacaaaagtttaaaattatgaccccccaatgacca |
5233086 |
T |
|
| Q |
286 |
tcttatatgtgcaatttctccatttacatatttgtgacacatgtaacacatagttttacataattgacatcttcatgtcacaaaaaagggtcttaaaatc |
385 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233085 |
tcttatatgtgcaatttctccatttagacatttgtgacacatgtaacacatagttttacataattgacatcttcatgtcacaaaaaagggtcttaaaatc |
5232986 |
T |
|
| Q |
386 |
ttaatttgtcacaacattgcaaagaatatttgattccaagtatcaggaacaccaggcaaacaccaatgtatgcaatcagcattcaatggattagtccttt |
485 |
Q |
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| T |
5232985 |
ttaatttgtcacaacattgcaaagaatatttgattccaagtatcaggaacaccaggcaaacaccaatgtatacaatcagcattcaatggattagtccttt |
5232886 |
T |
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| Q |
486 |
cttcttcatttaacaatttgccaccaatttcactataaactgaggaatgaccatcaattctatattcagagatttgtgtaatgttgatgactgttactgg |
585 |
Q |
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| T |
5232885 |
cctcttcatttaacaatttgccaccagtttcagtataaactgaggaatgaccatcaattctatactcagaaatttgtgtaatattgatgactgttactgg |
5232786 |
T |
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| Q |
586 |
aactttcattttcttgataactttggctacaacactcatcatacctttatttgaaccacttcccc |
650 |
Q |
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| T |
5232785 |
aactttcattttcttgataactttggctacaacactcatcatacctttatttgaaccacttcccc |
5232721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 5233288 - 5233205
Alignment:
| Q |
79 |
aggaaggaaacccatttatttgca-cgtaccttaataggggtggacacatatatggctaccattcaaaattgtaatgaaaatac |
161 |
Q |
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| T |
5233288 |
aggaaggaaacccatttatttgaaacgtaccttagtaggggtggacacatatatggctaccattaaaaattgtagtgaaaatac |
5233205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 51877530 - 51877588
Alignment:
| Q |
404 |
gcaaagaatatttgattccaagtatcaggaacaccaggcaaacaccaatgtatgcaatc |
462 |
Q |
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| T |
51877530 |
gcaaagagcatttcattccatgtatcaggaacaccaggcaaacaccagtgtaagcaatc |
51877588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 4075260 - 4075309
Alignment:
| Q |
418 |
attccaagtatcaggaacaccaggcaaacaccaatgtatgcaatcagcat |
467 |
Q |
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| T |
4075260 |
attccaagtatcaggcacaccagggagacaccaatgtatgcaatctgcat |
4075309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 398 - 656
Target Start/End: Complemental strand, 25340304 - 25340046
Alignment:
| Q |
398 |
aacattgcaaagaatatttgattccaagtatcaggaacaccaggcaaacaccaatgtatgcaatcagcattcaatggattagtcctttcttcttcattta |
497 |
Q |
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|||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| |||||| ||||| ||||||||| ||| |
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| T |
25340304 |
aacattgccaaaaatatttgattccatgtatctggaacaccaggcaaacaccaatgtatacaatctgcattttgtggatttgtcctctcttcttcactta |
25340205 |
T |
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| Q |
498 |
acaatttgccaccaatttcactataaactgaggaatgaccatcaattctatattcagagatttgtgtaatgttgatgactgttactggaactttcatttt |
597 |
Q |
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||||||| || ||| ||||| |||| ||||| |||||||||||||||||||| || || |||||||| | |||||||| ||| ||||||||||||||||| |
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| T |
25340204 |
acaattttcctccattttcagtatacactgaagaatgaccatcaattctatactctgatatttgtgttacgttgatgaatgtcactggaactttcatttt |
25340105 |
T |
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| Q |
598 |
cttgataactttggctacaacactcatcatacctttatttgaaccacttcccctatgct |
656 |
Q |
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||| | |||||| ||||| |||||||| |||| ||||| |||||| |||||| ||||| |
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| T |
25340104 |
cttcacaacttttgctaccacactcattatacgtttatcagaaccagttccccaatgct |
25340046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 463
Target Start/End: Complemental strand, 15113399 - 15113354
Alignment:
| Q |
418 |
attccaagtatcaggaacaccaggcaaacaccaatgtatgcaatca |
463 |
Q |
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| T |
15113399 |
attccaagtatcaggaacaccaggcagacaccaatggctgcaatca |
15113354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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