View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6477_low_10 (Length: 327)
Name: NF6477_low_10
Description: NF6477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6477_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 882979 - 883254
Alignment:
| Q |
1 |
tggtcacacacaaatgcatctagtgcgttatttattactattatagtttcatggtacaccaaagtaactaggaggagtcttcgatgctagcaaatacctc |
100 |
Q |
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| T |
882979 |
tggtcacacacaaatgcatctagtgcgttatttattactattatagtttcatggtacaccaaagtaactaggaggagtcttcgatgctagcaaatacctc |
883078 |
T |
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| Q |
101 |
caattcattccctgcatatacaattaaaattaggggatcatcccataatttcagtaaattatagtacaaaaattactaattaattagtcttgattaccat |
200 |
Q |
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| T |
883079 |
caattcattccctgcatatactattaaaattaggggatcatcccataatttcagtaaattatagtacaaaaattactaattaattagtcttgattaccat |
883178 |
T |
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| Q |
201 |
cagggtcatagaagaaaactcgtttgatgttgccattagtagtctcaaaagtctcaatacccttgttctgtaaatg |
276 |
Q |
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| T |
883179 |
cagggtcatagaagaaaactcgtttgatgttgccattagtagtctcaaaagtctcaatacccttgtcctgtaaatg |
883254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 880561 - 880606
Alignment:
| Q |
194 |
ttaccatcagggtcatagaagaaaactcgtttgatgttgccattag |
239 |
Q |
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| T |
880561 |
ttaccatcagggtcaaaaaagaaaacttgtttgattttgccattag |
880606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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