View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6477_low_14 (Length: 274)
Name: NF6477_low_14
Description: NF6477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6477_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 555260 - 555009
Alignment:
| Q |
9 |
agcacagacgcaaggaaatttgctatttgcattattcactacaatcattccaccatcaacacaatcagaaaacattgaactcttaattaacatcgacatt |
108 |
Q |
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| T |
555260 |
agcactgacgcaaggaaatttgctatttgcattattcactacaatcattccaccatcaacacaatcagaaaacattgaactcttaattaacatcgacatt |
555161 |
T |
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| Q |
109 |
attcgccactaatattaaataaatttctcgatcgcttcaattctcttttattcaactctttcaaaaaacatttccatttgcagttctcataattaacttc |
208 |
Q |
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| T |
555160 |
attcgccactaatattaaataaatttctcgatcgcttcaattctcttttattcaactctttcaaaaaacatttccatttgcagttctcataattaacttc |
555061 |
T |
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| Q |
209 |
atataaattaaagcaaaaaacaaaactataatctgatcatgaaggaacatag |
260 |
Q |
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| T |
555060 |
atataaattaaagcaaaaaacaaaactataatctgatcatgaaggaacatag |
555009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 41225927 - 41225976
Alignment:
| Q |
178 |
atttccatttgcagttctcataattaacttcatataaattaaagcaaaaa |
227 |
Q |
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| T |
41225927 |
atttccatttgcaattctcttaattaccatcatataaattaaagcaaaaa |
41225976 |
T |
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