View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6477_low_15 (Length: 253)
Name: NF6477_low_15
Description: NF6477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6477_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 29022582 - 29022352
Alignment:
| Q |
22 |
acgcggtaaccctgcaagatggccgaactgaagaagatgattccgagcctcatatggaatgacgcaagagataccgagccattggaaaaccaaaaaccag |
121 |
Q |
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| T |
29022582 |
acgcggtaaccctgcaagatggccgaactgaagaagatgattctaagcctcatatggaacgacgcaagagataccgtgccattggaaaataaaaaaccag |
29022483 |
T |
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| Q |
122 |
acgctgcaaaatgtgttgcagccaaagaacaagtgatctcaacttttggaagctaactc---nnnnnnnnaagtagcatactgatttgagttcacacatt |
218 |
Q |
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| T |
29022482 |
acgctgaaaaatgtgttgcagccaaagaacaagtgatctcaacttttggaagctaactctttttttttttaagtagcatactgatttgagttcacacatt |
29022383 |
T |
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| Q |
219 |
ttaaatgtgaagaaatgaagaattatctacc |
249 |
Q |
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| T |
29022382 |
ttaaatgtgaagaaatgaagagttagctacc |
29022352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 9325205 - 9325069
Alignment:
| Q |
22 |
acgcggtaaccctgcaagatggccgaactgaagaagatgattccgagcctcatatggaatgacgcaagagataccgagccattggaaaaccaaaaaccag |
121 |
Q |
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| T |
9325205 |
acgcggtaaccccgcaagatggctgaactgaagaagatgctcccgagcctcatatggaacgacacaagagataccgagccaccggaaaaccaaaaaccac |
9325106 |
T |
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| Q |
122 |
acgctgcaaaatgtgttgcagccaaagaacaagtgat |
158 |
Q |
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| T |
9325105 |
acgctgcataatgtgtcacaaccaaagaacaagtgat |
9325069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 2704817 - 2704931
Alignment:
| Q |
44 |
ccgaactgaagaagatgattccgagcctcatatggaatgacgcaagagataccgagccattggaaaaccaaaaaccagacgctgcaaaatgtgttgcagc |
143 |
Q |
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| T |
2704817 |
ccgaactgaagaagatgatcccgagccacatatggaacgacgcgagagagaccgagccactggaaaaccaaaaatcacaccctgcaaaatgtgtcgcagc |
2704916 |
T |
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| Q |
144 |
caaagaacaagtgat |
158 |
Q |
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| T |
2704917 |
caaagaacaagtgat |
2704931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 27677577 - 27677524
Alignment:
| Q |
103 |
ttggaaaaccaaaaaccagacgctgcaaaatgtgttgcagccaaagaacaagtg |
156 |
Q |
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| T |
27677577 |
ttggaaaaccaagagccacacgctgcaaaatgtctcgcagccaaagaacaagtg |
27677524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 15109462 - 15109330
Alignment:
| Q |
26 |
ggtaaccctgcaagatggccgaactgaagaagatgattccgagcctcatatggaatgacgcaagagataccgagccattggaaaaccaaaaaccagacgc |
125 |
Q |
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||||| || |||||||| ||||||||||| ||||||| ||||||||| | ||| || ||| ||||| ||||||| ||| |||||||||||| |||| |
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| T |
15109462 |
ggtaatccagcaagatgcccgaactgaaggagatgatcacgagcctcaaaaggagcgatgcaggagatgtcgagccaccggagaaccaaaaaccacacgc |
15109363 |
T |
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| Q |
126 |
tgcaaaatgtgttgcagccaaagaacaagtgat |
158 |
Q |
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| | || |||||||||| |||| ||||||||| |
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| T |
15109362 |
tacttaaagtgttgcagctaaaggacaagtgat |
15109330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 16383011 - 16382975
Alignment:
| Q |
26 |
ggtaaccctgcaagatggccgaactgaagaagatgat |
62 |
Q |
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| T |
16383011 |
ggtaaccccacaagatggccgaactgaagaagatgat |
16382975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 21553708 - 21553671
Alignment:
| Q |
200 |
tgatttgagttcacacattttaaatgtgaagaaatgaa |
237 |
Q |
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| T |
21553708 |
tgattggagctcacacattttaaatgtgaagaaatgaa |
21553671 |
T |
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