View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6477_low_16 (Length: 251)

Name: NF6477_low_16
Description: NF6477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6477_low_16
NF6477_low_16
[»] chr3 (9 HSPs)
chr3 (8-231)||(9995625-9995848)
chr3 (8-231)||(10131298-10131534)
chr3 (8-233)||(10358688-10358924)
chr3 (62-231)||(48387502-48387689)
chr3 (132-231)||(10105618-10105717)
chr3 (132-231)||(10220285-10220384)
chr3 (132-231)||(10216766-10216865)
chr3 (132-231)||(10226378-10226477)
chr3 (9-65)||(48388031-48388087)
[»] chr5 (3 HSPs)
chr5 (132-231)||(26796237-26796336)
chr5 (132-231)||(26799755-26799854)
chr5 (132-231)||(26807305-26807404)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 9995625 - 9995848
Alignment:
Q  8 cgaagaatatactagattcattcctggacacggtgtggcttattgtctctgatgtttctcccgacctcgtaactaaaattccctatgcttttagaagtat 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9995625 cgaagaaaatactagattcattcctggacacggtgtggcttattgtctctgatgtttctcccgacctcgtaactaaaatttcctatgcttttagaagtat 9995724  T
Q  108 acttctgaacgatacaaaattaataaatacatccaaactcatatcgaggatgaaaaaagtagtgcggaacactcatagcaggatcacttgttaaacatta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||||    
T  9995725 acttctgaacgatacaaaattaataaatacatccaaactcatatcgaggatgaaaaaagtagcacggaaaactcatagcagaatcacttgttaaacatta 9995824  T
Q  208 acagaccctctatgcagattgaaa 231  Q
    ||||||  ||||||||||||||||    
T  9995825 acagacaatctatgcagattgaaa 9995848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 10131298 - 10131534
Alignment:
Q  8 cgaagaatatactagattcattcctggacacggtgtggcttattgtctctgatgtttctcccgacctcgtaactaaaattccctatgcttttagaagtat 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10131298 cgaagaaaatactagattcattcctggacacggtgtggcttattgtctctgatgtttctcccgacctcgtaactaaaattccctatg-ttttagaagtat 10131396  T
Q  108 acttctgaacgatacaaaatta--------------ataaatacatccaaactcatatcgaggatgaaaaaagtagtgcggaacactcatagcaggatca 193  Q
    |||||||||| |||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10131397 acttctgaaccatacaaaattaataaatttctttagataaatacatccaaactcatatcgaggatgaaaaaagtagtgcggaacactcatagcaggatca 10131496  T
Q  194 cttgttaaacattaacagaccctctatgcagattgaaa 231  Q
    |||||||||||||||||||||||||||||||| |||||    
T  10131497 cttgttaaacattaacagaccctctatgcagagtgaaa 10131534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 10358924 - 10358688
Alignment:
Q  8 cgaagaatatactagattcattcctggacacggtgtggcttattgtctctgatgtttctcccgacctcgtaactaaaattccctatgcttttagaagtat 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10358924 cgaagaaaatactagattcattcctggacacggtgtggcttattgtctctgatgtttctcccgacctcgtaactaaaattccatatgcttttagaagtat 10358825  T
Q  108 acttctgaacgatacaaaattaat--------------aaatacatccaaactcatatcgaggatgaaaaaagtagtgcggaacactcatagcaggatca 193  Q
    ||||||||||||||||||||||||              |||||| |||||||||||||||||||||   ||||||||| ||||||| |||||||||||||    
T  10358824 acttctgaacgatacaaaattaataaatttctttagacaaatacctccaaactcatatcgaggatg---aaagtagtgtggaacacacatagcaggatca 10358728  T
Q  194 cttgttaaacattaacagaccctctatgcagattgaaatg 233  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10358727 cttgttaaacattaacagaccctctatgcagattgaaatg 10358688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 62 - 231
Target Start/End: Complemental strand, 48387689 - 48387502
Alignment:
Q  62 tttctcccgacctcgtaactaaaattccctatgcttttagaagtatacttctgaacgatacaaaattaataaa------------------tacatccaa 143  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||                  |||||||||    
T  48387689 tttctcccgaccttgtaactaaaattccctatgtttttagaagtatacttctgaacgacacaaaattaataaaataatttagtcaaacaaatacatccaa 48387590  T
Q  144 actcatatcgaggatgaaaaaagtagtgcggaacactcatagcaggatcacttgttaaacattaacagaccctctatgcagattgaaa 231  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||||  ||||||||||||||||||| ||| ||||||||||||||||    
T  48387589 actcatatcgaggatgaaaaaaatagtgcagaaaactcatagcaggtacacttgttaaacattaacacaccatctatgcagattgaaa 48387502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 10105618 - 10105717
Alignment:
Q  132 aaatacatccaaactcatatcgaggatgaaaaaagtagtgcggaacactcatagcaggatcacttgttaaacattaacagaccctctatgcagattgaaa 231  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||  ||||| ||||||||||    
T  10105618 aaatacatccaaactcatatcgaggatgaaaaaagtagcgcggaaaactcatagcagaatcacttgttaaacattaacagacaatctatacagattgaaa 10105717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 10220285 - 10220384
Alignment:
Q  132 aaatacatccaaactcatatcgaggatgaaaaaagtagtgcggaacactcatagcaggatcacttgttaaacattaacagaccctctatgcagattgaaa 231  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  10220285 aaatacatccaaactcatatcgaggatgaaaaaagtagcgcggaaaattcatagcagaatcacttgttaaacattaacagacaatctatgcagattgaaa 10220384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 10216766 - 10216865
Alignment:
Q  132 aaatacatccaaactcatatcgaggatgaaaaaagtagtgcggaacactcatagcaggatcacttgttaaacattaacagaccctctatgcagattgaaa 231  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  10216766 aaatacatccaaactcataccgagggtgaaaaaagtagcgcggaaaactcatagcagaatcacttgttaaacattaacagacaatctatgcagattgaaa 10216865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 10226378 - 10226477
Alignment:
Q  132 aaatacatccaaactcatatcgaggatgaaaaaagtagtgcggaacactcatagcaggatcacttgttaaacattaacagaccctctatgcagattgaaa 231  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||  | ||||||||||||||    
T  10226378 aaatacatccaaactcatatcaaggatgaaaaaagtagcgcggaaaactcatagcagaatcacttgttaaacattaacagacaatttatgcagattgaaa 10226477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 48388087 - 48388031
Alignment:
Q  9 gaagaatatactagattcattcctggacacggtgtggcttattgtctctgatgtttc 65  Q
    |||||| || |||||||||||||||||||||||||||||||| ||||||||||||||    
T  48388087 gaagaaaatgctagattcattcctggacacggtgtggcttatcgtctctgatgtttc 48388031  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 26796237 - 26796336
Alignment:
Q  132 aaatacatccaaactcatatcgaggatgaaaaaagtagtgcggaacactcatagcaggatcacttgttaaacattaacagaccctctatgcagattgaaa 231  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  26796237 aaatacatccaaactcataccgaggatgaaaaaagtagcgcggaaaactcatagcagaatcacttgttaaacattaacagacaatctatgcagattgaaa 26796336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 26799755 - 26799854
Alignment:
Q  132 aaatacatccaaactcatatcgaggatgaaaaaagtagtgcggaacactcatagcaggatcacttgttaaacattaacagaccctctatgcagattgaaa 231  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  26799755 aaatacatccaaactcatatcgaggatgaaaaaagtagcgcggaaaattcatagcagaatcacttgttaaacattaacagacaatctatgcagattgaaa 26799854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 26807305 - 26807404
Alignment:
Q  132 aaatacatccaaactcatatcgaggatgaaaaaagtagtgcggaacactcatagcaggatcacttgttaaacattaacagaccctctatgcagattgaaa 231  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  26807305 aaatacatccaaactcatatcgaggatgaaaaaagtagcacggaaaactcatagcagaatcacttgttaaacattaacagacaatctatgcagattgaaa 26807404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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