View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6477_low_18 (Length: 244)
Name: NF6477_low_18
Description: NF6477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6477_low_18 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 43906676 - 43906908
Alignment:
| Q |
16 |
caaaaccttgtcatgtttcaacttgttctacaagaatgtcatgcaattcctttatagaaagtgaagtttgtgtttgtctacctatgcgtgtggcttggtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43906676 |
caaaaccttgtcatgtttcaacttgttctacaagaatgtcatgcaattcctttatagaaagtgaagtttgtgtttgtctacctatgcgtgtggcttggtt |
43906775 |
T |
|
| Q |
116 |
ttggtctatttcttttttgcttttagctcaaataggaaaaaatcacactgttaacaatggtggactccaaaattatagcgt-ccattgttaacct---ta |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||||||||| || |
|
|
| T |
43906776 |
ttggtctatttcttttttgcttttagctcaaataggaaaaaatcacactgttaacaatgttagacaacaaaattatagcgtcccattgttaaccttaata |
43906875 |
T |
|
| Q |
212 |
ataatacatacaatatagatatagataagcaca |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
43906876 |
ataatacatacaatatagatatagataagcaca |
43906908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University