View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6477_low_3 (Length: 663)
Name: NF6477_low_3
Description: NF6477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6477_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 109 - 498
Target Start/End: Complemental strand, 45386375 - 45385990
Alignment:
| Q |
109 |
cccatttgcagcctcagattgtgactgttgttaaaattcacatgcattgtgaagcttgtgcacaggagatnnnnnnnnggatactgaaaatgaagggtac |
208 |
Q |
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| T |
45386375 |
cccatttgcagcctcagattgtgactgttgttaaaattcacatgcattgtgaagcttgtgcacaggagataaaaaaaaggatactgaaaatgaagggtac |
45386276 |
T |
|
| Q |
209 |
tgtacaatatttaagtgtttttatttacaaaattatatggaattgtattttcactattaatttgttggatgttttaaaaatgagaccgaaccaattaaat |
308 |
Q |
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| T |
45386275 |
tgtacaatatttaagtctttttatttacaaaattatatagaattgtattttcactatt----tgttggatgttttaaaaatcagaccgaaccaattaaat |
45386180 |
T |
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| Q |
309 |
cattacgcgcataatattcactccacttatattattgaagtggagtaatgtaataatgaaattgattggcaggagtggaatgggtggaagctaatctgaa |
408 |
Q |
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| T |
45386179 |
cattacgcgtataatattcactccgcttatattattgaagtggagtaatgtaataatgaaattgattggcaggagtggaatgggtggaagctaatctgaa |
45386080 |
T |
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| Q |
409 |
gaactctgagttaagcgtgaagggagtgtatgattcagcaatgttggttgaatatgtgtacaagagaattgggaagcatgcagtgattgt |
498 |
Q |
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| T |
45386079 |
gaactctgaggtaagcgtgaagggagtgtatgattcagcaatgttggttgaatacatgtacaagagaattgggaagcatgcagtgattgt |
45385990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 368 - 495
Target Start/End: Complemental strand, 45390271 - 45390144
Alignment:
| Q |
368 |
aattgattggcaggagtggaatgggtggaagctaatctgaagaactctgagttaagcgtgaagggagtgtatgattcagcaatgttggttgaatatgtgt |
467 |
Q |
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| T |
45390271 |
aattgattggcaggagtggaattggtggaaactgatctgaagaactccgaggtaagtgtgaagggggtgtatgatccagcaatgttggttgaatatgtgt |
45390172 |
T |
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| Q |
468 |
acaagagaattgggaagcatgcagtgat |
495 |
Q |
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| T |
45390171 |
acaagagaattgggaagcatgcagtgat |
45390144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 45390734 - 45390626
Alignment:
| Q |
111 |
catttgcagcctcagattgtga---ctgttgttaaaattcacatgcattgtgaagcttgtgcacaggagatnnnnnnnnggatactgaaaatgaagggta |
207 |
Q |
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| T |
45390734 |
catttgcagcctcagattgtgattactgtccttaaagttcacatgcattgtgaagcttgtgcagaggaaatcaaaaaacggatacttaaaatgaatggta |
45390635 |
T |
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| Q |
208 |
ctgtacaat |
216 |
Q |
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|||| |||| |
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| T |
45390634 |
ctgtccaat |
45390626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 590 - 649
Target Start/End: Complemental strand, 45385898 - 45385839
Alignment:
| Q |
590 |
actaagttggaggaggagatgnnnnnnnntgaacactactttaatccaccaatcaatatg |
649 |
Q |
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| T |
45385898 |
actaagttggaggaggagatgaaaaaaaatgaacactactttaatccaccaatcaatatg |
45385839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 734341 - 734233
Alignment:
| Q |
111 |
catttgcagcctcagattgtga---ctgttgttaaaattcacatgcattgtgaagcttgtgcacaggagatnnnnnnnnggatactgaaaatgaagggta |
207 |
Q |
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|||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||| || ||||||| |||||||| |||| |
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| T |
734341 |
catttgcagcctcagattgtgattactgtccttaaagttcacatgcattgtgaagcttgtgcagaggaaatcaaaaaacggatacttaaaatgaatggta |
734242 |
T |
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| Q |
208 |
ctgtacaat |
216 |
Q |
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|||| |||| |
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| T |
734241 |
ctgtccaat |
734233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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