View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6477_low_4 (Length: 545)
Name: NF6477_low_4
Description: NF6477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6477_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 555231 - 555765
Alignment:
| Q |
1 |
gcaaatagcaaatttccttgcgtcagtgctggttgcttggatatttctttttattctgagtggtatttgaaagtatcagtgtatcctgttttgctcgaga |
100 |
Q |
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| T |
555231 |
gcaaatagcaaatttccttgcgtcagtgctggttgcttggatatttctttttattctgagtggtatttgaaagtatcagtgtatcctgttttgctcgaga |
555330 |
T |
|
| Q |
101 |
attatgcttgattttggaaattaatgaaaaggacaatgtgttacatatctaatctttggaagtattgatgtattcaattttgttatgtatctgatgcact |
200 |
Q |
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| T |
555331 |
attatgcttgattttggaaattaatgaaaaggacaatgtgttacatatctaatctttggaagtattgatgtattcaattttgttatgtatctgatgcact |
555430 |
T |
|
| Q |
201 |
tttttgtggtttagctgtcgttcaagcttcccgatggttggttggttgagcaccggtgttgttcgtctaaccttgactcaataaggtaacattctttctc |
300 |
Q |
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| T |
555431 |
tttttgtggtttagctgtcgttcaagcttcccgatggttggttggttgagcaccggtgttgttcgtctaaccttgactcgataaggtaacattctttctc |
555530 |
T |
|
| Q |
301 |
cccttattttctcttccagttaattatttatgcatgtaccctatgcattcacatatatagtttgccttaattttataaatagctaaacaacattgctgat |
400 |
Q |
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| T |
555531 |
cccttattttctcttccagttaattatttatgcatgtaccctatgcattcacatatatagtttgccttaattttataaatagctaaacaacattgctgat |
555630 |
T |
|
| Q |
401 |
aatatagttttcttcagtaggccaagttacaattgattcagccatgtaataannnnnnnnnnngaagaaccatgtaataaaaattaacacacagaagcta |
500 |
Q |
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| T |
555631 |
aatatagttttcttaagtaggccaagttacaattgattcagccatgtaataatttttttttttgaagaaccatgtaataaaaattaacacacagaagcta |
555730 |
T |
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| Q |
501 |
ggggaaagcaagtgtaatcccttgttatgcttcat |
535 |
Q |
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| T |
555731 |
ggggaaagcaagtgtaatcccttgttatgcttcat |
555765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 48 - 252
Target Start/End: Original strand, 1597223 - 1597426
Alignment:
| Q |
48 |
tttttattctgagtggtatttgaaagtatcagtgtatcctgttttgctcgagaattatgcttgattttggaaattaatgaaaaggacaatgtgttacata |
147 |
Q |
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||||||| |||| || | |||| ||||||| ||||||||||||||||| || ||| ||||||||||| |||||| |||||| |||||||||||||| || |
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| T |
1597223 |
tttttatgctgattgatctttggaagtatcggtgtatcctgttttgcttgataatcatgcttgatttgggaaatgaatgaagaggacaatgtgttatgta |
1597322 |
T |
|
| Q |
148 |
tctaatctttggaagtattgatgtattcaattttgttatgtatctgatgcacttttttgtggtttagctgtcgttcaagcttcccgatggttggttggtt |
247 |
Q |
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||| |||||||||||||||||||||||| ||||||| |||||||||||| | ||||||||| |||||||| ||||||||||| || |||||||||||| |
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| T |
1597323 |
tctgatctttggaagtattgatgtattc-tgtttgttacgtatctgatgcattattttgtggtctagctgtcattcaagcttcctgaaggttggttggtt |
1597421 |
T |
|
| Q |
248 |
gagca |
252 |
Q |
| |
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||||| |
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| T |
1597422 |
gagca |
1597426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 252
Target Start/End: Complemental strand, 41225725 - 41225510
Alignment:
| Q |
48 |
tttttattctgagtggtatttgaaagtatcagtgtatcctgttttgctcgagaattatgcttgattttggaaattaatgaaaaggacaatgtgttacata |
147 |
Q |
| |
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||||||| |||||| | |||| |||||| ||||||||| |||||||| |||||||||||||| || ||||| |||||| |||||| |||||| || |
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| T |
41225725 |
tttttatggtgagtgatctttggaagtattggtgtatccttttttgctctagaattatgcttgacttgagaaatgaatgaagaggacagtgtgttgtgta |
41225626 |
T |
|
| Q |
148 |
tctaatctttggaagtattgatgtattcaattttgttatgtatctgatgcacttttttg-----------tggtttagctgtcgttcaagcttcccgatg |
236 |
Q |
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| T |
41225625 |
tatgatctgtagaagtactgatgcattctgttttgtaatgtatctgatggtttttttttatttttttttatggtttggctgtcgttcaagcttcccgatg |
41225526 |
T |
|
| Q |
237 |
gttggttggttgagca |
252 |
Q |
| |
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|||||||||||||||| |
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| T |
41225525 |
gttggttggttgagca |
41225510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 452
Target Start/End: Complemental strand, 41224871 - 41224795
Alignment:
| Q |
376 |
taaatagctaaacaacattgctgataatatagttttcttcagtaggccaagttacaattgattcagccatgtaataa |
452 |
Q |
| |
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| T |
41224871 |
taaatagctaaacagcgttgctgataatataattttcttggttaggctaatttacacttgattgaaccatgtaataa |
41224795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 41225473 - 41225433
Alignment:
| Q |
285 |
ggtaacattctttctccccttattttctcttccagttaatt |
325 |
Q |
| |
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|||||| |||||||||||||| ||||||| ||||||||||| |
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| T |
41225473 |
ggtaaccttctttctccccttcttttctcctccagttaatt |
41225433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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