View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6477_low_5 (Length: 534)
Name: NF6477_low_5
Description: NF6477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6477_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 69 - 519
Target Start/End: Complemental strand, 36960342 - 36959892
Alignment:
| Q |
69 |
ctattatttatgcagaagtgcagccgatggagatacgacttcaaaggctgtgcttgattgtgaggaccctgtgatagtgctatcacttgaagttgaggtc |
168 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36960342 |
ctattatttatgtagaagtgcagcggatggagatacgacttcaaaggctgtgcttgattgtgaggaccctgtgatagtgctatcacttgaagttgaggtc |
36960243 |
T |
|
| Q |
169 |
ccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtattataggtagatgcattcatctgtaatggaagattag |
268 |
Q |
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| T |
36960242 |
ccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtattataggtagatgcattcatctgtaatggaagattag |
36960143 |
T |
|
| Q |
269 |
gtaatggagcatcaaagttaagcacttgaacaacttgcctaatcacaggcctctgaagatgatctgtatgagtacaccaaagtccaactatcattaacct |
368 |
Q |
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| T |
36960142 |
gtaatggagcatcaaagttaagcacttgaacaacttgcctaatcataggcctctgaagatgatctgtatgagtacaccaaagtccaactatcattaacct |
36960043 |
T |
|
| Q |
369 |
ctctacttccttctcattaaattcaccatataatcttgaatcagctgctttaagaagatcaccattaccatatagttcgcaaacccaatccaccaagtaa |
468 |
Q |
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| T |
36960042 |
ctctacttccttctcattaaattcaccatataatcttgaatcagctgctttaagaagatcaccattaccatatagttcgcaaacccaatccaccaagtaa |
36959943 |
T |
|
| Q |
469 |
atatgttcttcactaagacttggttcaattgcctttctaccacaagctatt |
519 |
Q |
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| T |
36959942 |
atatgttcttcactaagacttggttcaattgcctttctaccacaagctatt |
36959892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 69 - 519
Target Start/End: Complemental strand, 36950208 - 36949758
Alignment:
| Q |
69 |
ctattatttatgcagaagtgcagccgatggagatacgacttcaaaggctgtgcttgattgtgaggaccctgtgatagtgctatcacttgaagttgaggtc |
168 |
Q |
| |
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|||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36950208 |
ctattatttatgtagcagtgcagccgatggagatatgacttcaaaggctgtgcttgattgtgaggaccctgtgatagtgctatcacttgaagttgaggtc |
36950109 |
T |
|
| Q |
169 |
ccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtattataggtagatgcattcatctgtaatggaagattag |
268 |
Q |
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| T |
36950108 |
ccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtattataggtagatgcattcatctgtaatggaagattag |
36950009 |
T |
|
| Q |
269 |
gtaatggagcatcaaagttaagcacttgaacaacttgcctaatcacaggcctctgaagatgatctgtatgagtacaccaaagtccaactatcattaacct |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36950008 |
gtaatggagcatcaaagttaagcacttgaacaacttgcctaatcataggcctctgaagatgatctgtatgagtacaccaaagtccaactatcattaacct |
36949909 |
T |
|
| Q |
369 |
ctctacttccttctcattaaattcaccatataatcttgaatcagctgctttaagaagatcaccattaccatatagttcgcaaacccaatccaccaagtaa |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36949908 |
ctctacttccttctcattaaattcaccatataatcttgaatcagctgctttaagaagatcaccattaccatatagttcgcaaacccaatccaccaagtaa |
36949809 |
T |
|
| Q |
469 |
atatgttcttcactaagacttggttcaattgcctttctaccacaagctatt |
519 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36949808 |
atatgttcttcactaagacttggttcaattgcctttctaccacaagctatt |
36949758 |
T |
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