View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6477_low_6 (Length: 409)
Name: NF6477_low_6
Description: NF6477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6477_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 29062716 - 29062335
Alignment:
| Q |
8 |
catcatcaataatgtttatcaaaattcaacatgtcagctccatttggttcatataaagggaatttgtaccaactcccaaggaagtccaacacacaataag |
107 |
Q |
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| T |
29062716 |
catcatcaataatgtttatcaaaattcaacatgtcagctccatttggttcatataaaggaaatttgtaccaactcccaaggaagtccaacacacaataag |
29062617 |
T |
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| Q |
108 |
ttaaagggcatttcttgaaaagatggtctagactttctgaaacacccgagcaacaagggcaaaaagtatcctttaaaaacccttgaaaaaatgagaaatt |
207 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29062616 |
ttaaagggcatttcttgaaaagatggtctaaactttctgaaacacccgagcaacaagggcaaaaagtatcctttaaaaacccttgaaaaaacgagaaatt |
29062517 |
T |
|
| Q |
208 |
attatcaataaaagcattgtgatataccccacataaataatcacattcgttatggtcctttccaacgccatcaggtgagtattgttgactattggaagtt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29062516 |
attatcaataaaagcattgtgatataccccacataaataatcacattcgttatg----tttccaacgccatcgggtgagtattgttgactattggaagtt |
29062421 |
T |
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| Q |
308 |
ccaacgatgtgcacgtcatataaacataaaattatccattgggatgcactcccgagcaatattatcctctcctaaagcgtttgata |
393 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29062420 |
ccaacgatatgcacgtcataaaaacataaaattatccattgggatgcactcccgagcaatattatcctctcctaaagcgtttgata |
29062335 |
T |
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