View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6477_low_7 (Length: 395)
Name: NF6477_low_7
Description: NF6477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6477_low_7 |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 2934508 - 2934876
Alignment:
| Q |
17 |
taatgatcatagccgccattagttagttagactcgaagaagaaaggtgaacaattgttttttcatagtactttctccttttaaggaattataaaataaaa |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2934508 |
taatgatcatagccgccattagttagttaggctcgaagaagaaaggtgaacaattgttttttcatagtactttctccttttaaggaattataaaataaaa |
2934607 |
T |
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| Q |
117 |
cattgtattagaaattatatattttactttttcaaagttaaaatagtaaaac-tttttcttttgttctaagttccttaactagtatttctcnnnnnnnnn |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
2934608 |
cattgtattagaaattatatattttactttttcaaagttaaaatagtaaaacttttttcttttgttctaagttccttaac---tatttctcaaaaaaaaa |
2934704 |
T |
|
| Q |
216 |
taaaata-acattctttgactattgtccggagcactcgttaacaaaacccttaaacataatacttcctttttatcaattactttctctagtcttttttat |
314 |
Q |
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|||||| | ||||||||| || |||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
2934705 |
-aaaatatatattctttgattactgtccggagcactctttaacaaaacccttaaacataatacttcttttttatcaactactttctctagtcttttttat |
2934803 |
T |
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| Q |
315 |
aagaaacaaaataaataagtcatgaaaattaaggaaatacattaaaataagttatattcatttaattcatctc |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2934804 |
aagaaacaaaataaataagtcatgaaaattaaggaaatacattaaaataagttatattcatttaatacatctc |
2934876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 36301220 - 36301285
Alignment:
| Q |
94 |
ttttaaggaattataaaataaaacattgtattagaaattatatattttactttttcaaagttaaaa |
159 |
Q |
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| T |
36301220 |
ttttaaggaattataaaagaaaatattattttagaaattgtgtattttacattttaaaagttaaaa |
36301285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 35285475 - 35285538
Alignment:
| Q |
96 |
ttaaggaattataaaataaaacattgtattagaaattatatattttactttttcaaagttaaaa |
159 |
Q |
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| T |
35285475 |
ttaaggaaatataaaataaaatattgtattagaaattgtgtattttattttttaaaagttaaaa |
35285538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 23086444 - 23086507
Alignment:
| Q |
96 |
ttaaggaattataaaataaaacattgtattagaaattatatattttactttttcaaagttaaaa |
159 |
Q |
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|||||||||||||||| |||| ||||| ||||||||| | |||| |||||||| |||||||||| |
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| T |
23086444 |
ttaaggaattataaaaaaaaatattgttttagaaattgtgtattatactttttaaaagttaaaa |
23086507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 139
Target Start/End: Original strand, 36754731 - 36754774
Alignment:
| Q |
96 |
ttaaggaattataaaataaaacattgtattagaaattatatatt |
139 |
Q |
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|||| ||||||||||| |||||||||||||||||||| |||||| |
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| T |
36754731 |
ttaaagaattataaaagaaaacattgtattagaaattgtatatt |
36754774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 50662540 - 50662477
Alignment:
| Q |
96 |
ttaaggaattataaaataaaacattgtattagaaattatatattttactttttcaaagttaaaa |
159 |
Q |
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| T |
50662540 |
ttaaggaattataaaataaaatattatattggaaattttctattctactttttgaaagtcaaaa |
50662477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 36619990 - 36619923
Alignment:
| Q |
96 |
ttaaggaattataaaataaaacattgtattagaaattatatattttactttttcaaagttaaaatagt |
163 |
Q |
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| T |
36619990 |
ttaagggattataaaaggaaatattgtattggaaattgtgtattttactttttaaaagtttaaatagt |
36619923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 387
Target Start/End: Complemental strand, 6983 - 6911
Alignment:
| Q |
315 |
aagaaacaaaataaataagtcatgaaaattaaggaaatacattaaaataagttatattcatttaattcatctc |
387 |
Q |
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| T |
6983 |
aagaaacaaaagacataaaacattaagattaaggaaatacattgaaaatagttatcttcatttaatacatctc |
6911 |
T |
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