View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6477_low_8 (Length: 394)
Name: NF6477_low_8
Description: NF6477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6477_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 19774864 - 19775215
Alignment:
| Q |
19 |
ccaaatatattacaaatctaaagcttggttattgcgcaaaccaattatcagtttgcttctgtatgaaacaattttatcacaaacaagaataaattatact |
118 |
Q |
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| T |
19774864 |
ccaaatatattacaaatctaaagcttggttattgcgcaaaccaattatcagtttgcttctgtatgaaacaattttatcacaaacaagaatagattatact |
19774963 |
T |
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| Q |
119 |
tcattacttctcatttttaaagcagcatctatcatgaatgcaaccaactcaagttaacaataaataagttctcaaacatcttggttgggacaaaaatagt |
218 |
Q |
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| T |
19774964 |
tcattacttctcattttttaagcagcatctatcatgaatgcaaccagctcaagttaacaataaataagttctcaaacatcttggttgggacaaaaatagt |
19775063 |
T |
|
| Q |
219 |
aatactaccaccatagtaatactaccaccaaaacatatcaactccactatgaagaggataatatcacgatggccgtacttctgtcactaacaaaattaca |
318 |
Q |
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| T |
19775064 |
aa-----------------tactaccaccaaaacatatcaactccactatgaagaggataatatcacgatggccgtacttctgtaactaacaaaattaca |
19775146 |
T |
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| Q |
319 |
actcggtttatagacctccaccaactcaggtggtaaaagataaacccaacatggttgttataccctttg |
387 |
Q |
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| T |
19775147 |
actcggtttatagacctccaccaactcaggtggcaaaagataaacccaacatggttgttataccctttg |
19775215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 19745038 - 19745202
Alignment:
| Q |
19 |
ccaaatatattacaaatctaaagcttggttattgcgcaaaccaattatcagtttgcttctgtatgaaacaattttatcacaaacaagaataaattatact |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19745038 |
ccaaatatattacaaatctaaagcttggttattgcgcaaaccaattatcagtttgcttctgtatgaaacaattttatcacaaacaagaataaattatact |
19745137 |
T |
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| Q |
119 |
tcattacttctcatttttaaagcagcatctatcatgaatgcaaccaactcaagttaacaataaat |
183 |
Q |
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| T |
19745138 |
tcattacttctcattttttaagcagcatctatcatgaatgcaaccaactcaagttaccaaaaaat |
19745202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 44424868 - 44424792
Alignment:
| Q |
131 |
atttttaaagcagcatctatcatgaatgcaaccaactcaagttaacaataaataagttctcaaacatcttggttggg |
207 |
Q |
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||||||| |||||||||||||||||| ||| ||| ||||||||||||||||| || ||||||||||| ||||||| |
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| T |
44424868 |
atttttacagcagcatctatcatgaacacaatcaattcaagttaacaataaatcaggcctcaaacatctgggttggg |
44424792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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