View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6478_high_10 (Length: 308)
Name: NF6478_high_10
Description: NF6478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6478_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 162 - 301
Target Start/End: Complemental strand, 3112822 - 3112681
Alignment:
| Q |
162 |
acagatgttaataggaatctaactagttaaaccatacatttaggtgtggaatattttctgtcaatnnnnnnn--ggtgtggaatattaaactacacatta |
259 |
Q |
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| T |
3112822 |
acagatgttaataggaatctaactagttaaaccatacatttaggtgtggaatattttctgtcaaaaaaaaaaaaggtgtggaatattaaactacacatta |
3112723 |
T |
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| Q |
260 |
cagtttctgctttcagttttatttaacaacctcttcatctca |
301 |
Q |
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| T |
3112722 |
cagtttctgctttcagttttatttaacaacctctttatctca |
3112681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 3112965 - 3112857
Alignment:
| Q |
19 |
ttatttccataagctatatcccaaacacactcataaatgcttattctatttctagtaaataaacacaaataagttattcatatatatcctaagtggcaca |
118 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3112965 |
ttatttccataagctatatcccaaacactctcataaatgcttattctatttctagtaaataaacacaaataagttattcatatatatcctcagtggcaca |
3112866 |
T |
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| Q |
119 |
tttatgctg |
127 |
Q |
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||||||||| |
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| T |
3112865 |
tttatgctg |
3112857 |
T |
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