View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6478_high_13 (Length: 252)
Name: NF6478_high_13
Description: NF6478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6478_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 46451818 - 46452049
Alignment:
| Q |
1 |
aatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttctttgattcca |
100 |
Q |
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| T |
46451818 |
aatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttctttgattcca |
46451917 |
T |
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| Q |
101 |
tttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451918 |
tttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctt |
46452017 |
T |
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| Q |
201 |
tggcttttacagagtatgttaagggtacctcc |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
46452018 |
tggcttttacagagtatgttaagggtacctcc |
46452049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 46344738 - 46344507
Alignment:
| Q |
1 |
aatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttctttgattcca |
100 |
Q |
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| T |
46344738 |
aatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttctttgattcca |
46344639 |
T |
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| Q |
101 |
tttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctt |
200 |
Q |
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| T |
46344638 |
tttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctt |
46344539 |
T |
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| Q |
201 |
tggcttttacagagtatgttaagggtacctcc |
232 |
Q |
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| T |
46344538 |
tggcctttacagagtatgttaagggtacctcc |
46344507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 46462786 - 46463017
Alignment:
| Q |
1 |
aatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttctttgattcca |
100 |
Q |
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| T |
46462786 |
aatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttctttgattcca |
46462885 |
T |
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| Q |
101 |
tttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctt |
200 |
Q |
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| T |
46462886 |
tttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctt |
46462985 |
T |
|
| Q |
201 |
tggcttttacagagtatgttaagggtacctcc |
232 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
46462986 |
tggcctttacagagtatgttaagggtacctcc |
46463017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 46466210 - 46466435
Alignment:
| Q |
3 |
tagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttctttgattccatt |
102 |
Q |
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||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||||||||||| ||||||| |
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| T |
46466210 |
tagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttgcttctttggttccatt |
46466309 |
T |
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| Q |
103 |
tttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttg |
202 |
Q |
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|| ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||| || |
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| T |
46466310 |
atttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgttgggtttgattgctctg |
46466409 |
T |
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| Q |
203 |
gcttttacagagtatgttaagggtac |
228 |
Q |
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||| ||||||| |||||||||||||| |
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| T |
46466410 |
gctgttacagaatatgttaagggtac |
46466435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 46471415 - 46471640
Alignment:
| Q |
3 |
tagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttctttgattccatt |
102 |
Q |
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||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||||||||||| ||||||| |
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| T |
46471415 |
tagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttgcttctttggttccatt |
46471514 |
T |
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| Q |
103 |
tttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttg |
202 |
Q |
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|| ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||| || |
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| T |
46471515 |
atttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgttgggtttgattgctctg |
46471614 |
T |
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| Q |
203 |
gcttttacagagtatgttaagggtac |
228 |
Q |
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||| ||||||| |||||||||||||| |
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| T |
46471615 |
gctgttacagaatatgttaagggtac |
46471640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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