View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6478_high_2 (Length: 483)
Name: NF6478_high_2
Description: NF6478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6478_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 15 - 354
Target Start/End: Original strand, 7572000 - 7572339
Alignment:
| Q |
15 |
agaaccaaaatccgcatttgtcattacctgcctcttgagaagaaagctaataccaaatgccaaatccccaataggccatttgccaagtgtctccgaatac |
114 |
Q |
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| T |
7572000 |
agaaccaaaatccgcatttgtcattacctgcctcttgagaagaaagctaataccaaatgccaaatccccaataggccatttgccaagtgtctccgaatac |
7572099 |
T |
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| Q |
115 |
gtaaacctaagagtttcagacaatgttgaaattgtctccaaccatgtagcaggggcttgaattaacctatgagtaacacggaaccgcatgtcagtcggcg |
214 |
Q |
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| T |
7572100 |
gtaaacctaagagtttcagacaatgttgaaattgtctccaaccatgtagcaggggcttgaattaacctatgagtaacacggaaccgcatgtcagtcggcg |
7572199 |
T |
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| Q |
215 |
catcactaccactttcttcaccatcttcatcaactgtggtttgagtctgtaatttcctattcaacgtatagtataaaagagctgctgcacctgctgcagt |
314 |
Q |
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| T |
7572200 |
catcactaccactttcttcaccatcttcatcaactgtggtttgagtctgtaatttcctattcaacgtatagtataaaagagctgctgcacctgctgcagt |
7572299 |
T |
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| Q |
315 |
agccattgttgcagttgccatgattaacctctccctttaa |
354 |
Q |
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| T |
7572300 |
agccattgttgcagttgccatgattaacctctccctttaa |
7572339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 428 - 470
Target Start/End: Original strand, 7572413 - 7572455
Alignment:
| Q |
428 |
ttcccaaattctcaatccatccaacttcaaatttcaaaatcct |
470 |
Q |
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| T |
7572413 |
ttcccaaattctcaatccatccaacttcaaatttcaaaatcct |
7572455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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