View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6478_high_6 (Length: 349)
Name: NF6478_high_6
Description: NF6478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6478_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 43527409 - 43527735
Alignment:
| Q |
18 |
gcatgctcgtaaaatgccaat----aagatgttgactatgaaattgttgctagtatgaatgatggaatggttggtgcaaagctaacaaatat------ag |
107 |
Q |
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| T |
43527409 |
gcatgctcgtaaaatgccaattaataagatgttgactatgaaattgttg-tagtatgaatgatggaatggttggtgcaaagctaacaaatatatatatag |
43527507 |
T |
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| Q |
108 |
ttgagtttctgctatcaattaatatgatgtgggactcaaggactgaggtaacaaatctgtgacgtgtagtttcttatagaaaactgatatttgcttcgat |
207 |
Q |
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| T |
43527508 |
ttgagtttctgctatcaattaatatgatgtgggactcaaggactgaggtaacaaatctgtgacgtgtagtttcttatagaaaactgatatttgcttcgat |
43527607 |
T |
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| Q |
208 |
gtatcttgcatggtgagcca-catccaatccttttattttctataatcaagcatgtaaataaaatgtctgtttatccaaccagaagagctttatttatca |
306 |
Q |
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| T |
43527608 |
gtatctttcatggcgagccatcatccaatccttttattttct----------atgtaaataaaatgtctgtttatccaaccagaagagctttatttatca |
43527697 |
T |
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| Q |
307 |
catga---attattcatttgatagtggatgcctatgat |
341 |
Q |
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| T |
43527698 |
catgaattattattcatttgatagtggatgcctatgat |
43527735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 43542722 - 43542874
Alignment:
| Q |
19 |
catgctcgtaaaatgccaat-----aagatgttgactatgaaattgttgctagtatgaatgatggaatggttggtgcaaagctaacaaatatagttga-g |
112 |
Q |
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| T |
43542722 |
catgctcgtaaaaagccaattgctgaagatgtagactatgaaattgttgctagtatgactgatggaatggttggtgcagagctagctaacatagttgagg |
43542821 |
T |
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| Q |
113 |
tttctgctatcaattaatatgatgtgggactcaaggactgaggtaacaaatctgtga |
169 |
Q |
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| T |
43542822 |
ttgctgctatc----aatatgatgcgggactcgaggaccgaggtaataaatccgtga |
43542874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 43543075 - 43543154
Alignment:
| Q |
243 |
ttttctataatcaagcatgtaaataaaatgtctgtttatccaaccagaagagctttatttatcacatgaattattcattt |
322 |
Q |
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| T |
43543075 |
ttttctaaaatcaagcatgcaaataaaaggtctgtttatccaaccataagtgctttatttattgcatgaattattcattt |
43543154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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