View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6478_low_1 (Length: 708)

Name: NF6478_low_1
Description: NF6478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6478_low_1
NF6478_low_1
[»] chr6 (15 HSPs)
chr6 (13-338)||(25186765-25187090)
chr6 (247-338)||(14781985-14782076)
chr6 (263-338)||(5675493-5675568)
chr6 (263-318)||(31848075-31848130)
chr6 (276-338)||(18489749-18489811)
chr6 (263-332)||(4103091-4103160)
chr6 (276-338)||(16477628-16477691)
chr6 (246-304)||(9756472-9756530)
chr6 (245-338)||(5195533-5195625)
chr6 (265-337)||(2854115-2854186)
chr6 (263-338)||(12607243-12607317)
chr6 (16-73)||(5195306-5195363)
chr6 (251-337)||(29362314-29362399)
chr6 (247-330)||(10286058-10286140)
chr6 (16-74)||(9756232-9756290)
[»] chr7 (24 HSPs)
chr7 (13-338)||(42453391-42453713)
chr7 (247-337)||(14241281-14241371)
chr7 (248-338)||(41242165-41242255)
chr7 (246-337)||(17263375-17263465)
chr7 (263-338)||(22681443-22681518)
chr7 (248-338)||(6459080-6459169)
chr7 (247-332)||(13427957-13428041)
chr7 (247-338)||(7566946-7567037)
chr7 (247-338)||(8752472-8752563)
chr7 (247-338)||(21120570-21120660)
chr7 (247-338)||(32215582-32215672)
chr7 (247-338)||(38889910-38890000)
chr7 (247-324)||(3091969-3092045)
chr7 (248-337)||(38651280-38651368)
chr7 (246-318)||(22358716-22358788)
chr7 (247-338)||(20398850-20398940)
chr7 (247-338)||(43656110-43656199)
chr7 (259-325)||(29802780-29802845)
chr7 (276-338)||(45140135-45140197)
chr7 (19-130)||(644773-644884)
chr7 (16-78)||(8752221-8752283)
chr7 (15-77)||(17263147-17263209)
chr7 (264-333)||(13778245-13778314)
chr7 (265-305)||(27294256-27294295)
[»] chr2 (21 HSPs)
chr2 (13-338)||(17607401-17607727)
chr2 (247-338)||(12915742-12915833)
chr2 (248-338)||(45701190-45701280)
chr2 (250-338)||(2220099-2220187)
chr2 (247-338)||(1206420-1206511)
chr2 (259-330)||(42184089-42184160)
chr2 (238-338)||(28543749-28543849)
chr2 (248-338)||(3376120-3376209)
chr2 (245-338)||(30515784-30515876)
chr2 (247-338)||(10005232-10005322)
chr2 (263-338)||(28209995-28210070)
chr2 (259-338)||(41647140-41647219)
chr2 (248-338)||(45468152-45468243)
chr2 (256-338)||(3203243-3203326)
chr2 (247-338)||(33006691-33006781)
chr2 (247-338)||(39994657-39994747)
chr2 (247-301)||(11123652-11123705)
chr2 (253-338)||(26404989-26405075)
chr2 (15-93)||(42183810-42183888)
chr2 (247-332)||(32603304-32603388)
chr2 (267-325)||(26438353-26438410)
[»] chr3 (13 HSPs)
chr3 (16-338)||(7676772-7677093)
chr3 (250-338)||(30188542-30188630)
chr3 (247-338)||(7638887-7638978)
chr3 (247-338)||(7937443-7937533)
chr3 (247-338)||(10752221-10752312)
chr3 (247-338)||(21477743-21477833)
chr3 (276-338)||(10773250-10773312)
chr3 (247-338)||(16898626-16898716)
chr3 (263-322)||(19667499-19667558)
chr3 (268-338)||(29685632-29685702)
chr3 (265-305)||(12215524-12215563)
chr3 (16-70)||(19667752-19667806)
chr3 (278-338)||(25280391-25280451)
[»] chr4 (30 HSPs)
chr4 (467-690)||(52449531-52449761)
chr4 (179-338)||(46191197-46191356)
chr4 (247-338)||(13159701-13159792)
chr4 (247-338)||(44546612-44546703)
chr4 (265-338)||(135823-135895)
chr4 (233-338)||(20177380-20177484)
chr4 (377-440)||(52449467-52449530)
chr4 (235-338)||(55284843-55284947)
chr4 (247-338)||(1463319-1463410)
chr4 (263-338)||(17186270-17186345)
chr4 (247-338)||(21141909-21142000)
chr4 (247-338)||(42396699-42396789)
chr4 (248-338)||(39868311-39868400)
chr4 (264-338)||(16736171-16736246)
chr4 (16-115)||(21141678-21141777)
chr4 (247-338)||(26893331-26893421)
chr4 (247-338)||(28709150-28709240)
chr4 (247-304)||(28740816-28740873)
chr4 (247-295)||(135895-135943)
chr4 (247-338)||(17712675-17712765)
chr4 (263-338)||(22322415-22322490)
chr4 (263-338)||(24010498-24010573)
chr4 (263-338)||(52762930-52763004)
chr4 (259-325)||(7272679-7272745)
chr4 (267-332)||(11821501-11821567)
chr4 (247-301)||(14546389-14546443)
chr4 (237-338)||(34684017-34684118)
chr4 (247-338)||(36825780-36825871)
chr4 (247-338)||(48782510-48782602)
chr4 (263-338)||(37013920-37013995)
[»] chr5 (21 HSPs)
chr5 (15-338)||(23256917-23257240)
chr5 (247-338)||(37268317-37268408)
chr5 (265-338)||(26397288-26397361)
chr5 (247-338)||(21269881-21269972)
chr5 (247-338)||(21271895-21271986)
chr5 (247-338)||(38099554-38099644)
chr5 (275-338)||(40632650-40632713)
chr5 (263-337)||(7123934-7124008)
chr5 (248-332)||(24251286-24251370)
chr5 (247-338)||(17945877-17945967)
chr5 (276-338)||(21825219-21825282)
chr5 (252-338)||(9194545-9194631)
chr5 (247-337)||(18149364-18149453)
chr5 (265-338)||(1585473-1585545)
chr5 (254-338)||(39565366-39565448)
chr5 (245-303)||(33651254-33651312)
chr5 (277-338)||(13390354-13390415)
chr5 (16-120)||(9194758-9194862)
chr5 (247-338)||(15504881-15504971)
chr5 (276-338)||(23264113-23264175)
chr5 (266-338)||(17696036-17696107)
[»] chr1 (11 HSPs)
chr1 (17-338)||(12526943-12527263)
chr1 (247-338)||(10349521-10349612)
chr1 (263-338)||(20819605-20819680)
chr1 (247-324)||(39581405-39581483)
chr1 (263-338)||(24509319-24509393)
chr1 (255-318)||(12396356-12396417)
chr1 (276-338)||(7637640-7637702)
chr1 (13-78)||(33567412-33567477)
chr1 (264-340)||(1870486-1870562)
chr1 (247-338)||(24308279-24308369)
chr1 (22-75)||(24308541-24308594)
[»] chr8 (11 HSPs)
chr8 (247-338)||(17936326-17936417)
chr8 (248-338)||(15172800-15172890)
chr8 (247-324)||(39143298-39143374)
chr8 (245-338)||(15353331-15353423)
chr8 (277-338)||(29934709-29934770)
chr8 (224-301)||(39919336-39919412)
chr8 (264-338)||(21313795-21313870)
chr8 (247-338)||(9018047-9018142)
chr8 (277-338)||(1219198-1219259)
chr8 (271-300)||(20877279-20877308)
chr8 (22-62)||(13368359-13368399)
[»] scaffold0074 (2 HSPs)
scaffold0074 (247-338)||(36044-36135)
scaffold0074 (16-75)||(36308-36367)
[»] scaffold1251 (1 HSPs)
scaffold1251 (275-337)||(861-922)
[»] scaffold0267 (1 HSPs)
scaffold0267 (247-338)||(10968-11058)
[»] scaffold0116 (1 HSPs)
scaffold0116 (247-338)||(42191-42281)
[»] scaffold0461 (2 HSPs)
scaffold0461 (247-305)||(2192-2250)
scaffold0461 (247-305)||(9128-9186)
[»] scaffold0124 (1 HSPs)
scaffold0124 (247-305)||(40334-40392)
[»] scaffold0423 (1 HSPs)
scaffold0423 (264-338)||(10017-10091)
[»] scaffold0386 (1 HSPs)
scaffold0386 (233-282)||(15861-15910)
[»] scaffold0334 (1 HSPs)
scaffold0334 (275-338)||(3066-3129)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-157; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 25187090 - 25186765
Alignment:
Q  13 ttcttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattctttttta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25187090 ttcttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattcttttcta 25186991  T
Q  113 tggctttctacaaatgttgttcatattgctttcagtttccatgactagtggaggcatccgttgttatgtatgggtgtcttgtaatgttgttttatttttg 212  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25186990 tggctttctacaaatgttgttcctattgcttttagtttccatgactggtggaggcatccgttgttatgtatgggtgtcttgtaatgttgttttatttttg 25186891  T
Q  213 gtggaggcaacctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtt 312  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  25186890 gtggaggcaacctttgatttttggggccattttcttgtaacagatattgtgcgattcatcacttttagcacgccttgtgcggggtgaattactgatcgtt 25186791  T
Q  313 tgagcaatatatttcatttttatttg 338  Q
    ||||||||||||| ||||||||||||    
T  25186790 tgagcaatatattccatttttatttg 25186765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 14782076 - 14781985
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||  ||| |||||||| |||||||||||||||||||| |||||||||| ||  || ||||||||||||||| |||||| |||||    
T  14782076 ttgtaacagactttgggtgattcaccacttttagcacaccttgtgtggggtgaatctctcctcttttgagcaatatattccattttgatttg 14781985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 5675568 - 5675493
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||| ||||||| ||||||||||||||||||||||||  || |||| |||||||||| |||||| |||||    
T  5675568 gtgattcatcgcttttagtacaccttgtgcggggtgaatcacttctcttttgtgcaatatattccattttgatttg 5675493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 31848130 - 31848075
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||    
T  31848130 gtgattcatcacttttagcacaccttgtgcggggtgaatcactttgcttttgagca 31848075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 18489749 - 18489811
Alignment:
Q  276 tttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||| |||||| |||||    
T  18489749 tttagcacaccttgtgcggggtgaatcacctttcttttgagcaatatattccattttgatttg 18489811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 4103160 - 4103091
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttt 332  Q
    |||||||||| |||||||||| ||||||||||||||||||||| |   ||||||||||||||| ||||||    
T  4103160 gtgattcatcgcttttagcacgccttgtgcggggtgaatcactttcattttgagcaatatattccatttt 4103091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 16477691 - 16477628
Alignment:
Q  276 tttagcacaccttgtgcggggtgaatca-ctgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||||||||||||||||||||| || ||| ||||||||||||||| |||||| |||||    
T  16477691 tttagcacaccttgtgcggggtgaatcaccttttcttttgagcaatatattccattttgatttg 16477628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 9756472 - 9756530
Alignment:
Q  246 cttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcac 304  Q
    |||||||| || |||| ||| |||||||||||||||||||||||||||| |||||||||    
T  9756472 cttgtaactgacattgggtgtttcatcacttttagcacaccttgtgcggagtgaatcac 9756530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 5195533 - 5195625
Alignment:
Q  245 tcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||| | || |||| ||||||||||||||||||||||| |||||||||||| |||| |   | ||||||| |||||||||||||| |||||    
T  5195533 tcttgtatctgacattgggtgattcatcacttttagcacacattgtgcggggtggatcattccgcttttgagc-atatatttcattttgatttg 5195625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 2854186 - 2854115
Alignment:
Q  265 gattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 337  Q
    ||||||||| ||||||||||||||||||||||||||||||| |   |||||| |||||||| |||||| ||||    
T  2854186 gattcatca-ttttagcacaccttgtgcggggtgaatcactctgtttttgagtaatatattccattttgattt 2854115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 12607317 - 12607243
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||| ||||||||||||||||||||||| |||||||||||| | | ||||| |||| |||| |||||| |||||    
T  12607317 gtgatttatcacttttagcacaccttgtgc-gggtgaatcactctgcctttgaacaatttattccattttgatttg 12607243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 5195306 - 5195363
Alignment:
Q  16 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcct 73  Q
    |||||||||||||||||||||||||||| || |||| | ||||||||| || ||||||    
T  5195306 ttgggcaatttggaaggagaggaacaactgtatcttcaaaaatgcggttattgatcct 5195363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 337
Target Start/End: Original strand, 29362314 - 29362399
Alignment:
Q  251 aacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcg-tttgagcaatatatttcatttttattt 337  Q
    |||||||||||  |||||||||||| |||||||| ||||||  ||||||||||   |||| ||||||| |||||||||||||| ||||    
T  29362314 aacagatattggatgattcatcactcttagcacatcttgtgttgggtgaatca--attcgttttgagctatatatttcattttgattt 29362399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 10286058 - 10286140
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatt 330  Q
    |||||||||||  || ||||||||||| | |||||||||||||||||||||||||   |  |  ||||||||||||||||||||    
T  10286058 ttgtaacagattctgggtgattcatca-tattagcacaccttgtgcggggtgaatttatccttctttgagcaatatatttcatt 10286140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 9756232 - 9756290
Alignment:
Q  16 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctc 74  Q
    |||| ||||||||||||||   |||||||||||||||| ||||||||| || |||||||    
T  9756232 ttggacaatttggaaggagcaaaacaaccgtgtctttaaaaatgcggttattgatcctc 9756290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 42453391 - 42453713
Alignment:
Q  13 ttcttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattctttttta 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||    
T  42453391 ttcttgggcaatgtggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatccttgaaaaagtaaagtgtaattcttttcta 42453490  T
Q  113 tggctttctacaaatgttgttcatattgctttcagtttccatgactagtggaggcatccgttgttatgtatgggtgtcttgtaatgttgttttatttttg 212  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||   |||||||||||||    
T  42453491 tggctttctacaaatgttgttcctattgcttttagtttccatgactggtggaggcatccgttgttatgtatgggtgtcctgtaa---tgttttatttttg 42453587  T
Q  213 gtggaggcaacctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtt 312  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42453588 gtggaggcaacctttggtttttggtgtcattttcttgtaacagatattgtatgattcatcacttttagcacaccttatgcggggtgaatcactgttcgtt 42453687  T
Q  313 tgagcaatatatttcatttttatttg 338  Q
    ||||||||||||| ||||||||||||    
T  42453688 tgagcaatatattccatttttatttg 42453713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 247 - 337
Target Start/End: Original strand, 14241281 - 14241371
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 337  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||    
T  14241281 ttgtaacagatattgtgtgattcatcacttttagcacatcttgtgcggggtgaatcacttttcgttttagcaatatatttcattttgattt 14241371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 41242255 - 41242165
Alignment:
Q  248 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||   ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||||    
T  41242255 tgtaacagatatctagtgattcatcaattttagcacaccttgtgcggggtgaatcacttttcgtttgagtaatatattccattttgatttg 41242165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 246 - 337
Target Start/End: Original strand, 17263375 - 17263465
Alignment:
Q  246 cttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 337  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| | |||||||||||| |||| |||| ||||||||| |||||| ||||    
T  17263375 cttgtaacagatattgggtgattcatctcttttagcacaccttgtacagggtgaatcacttttcg-ttgaacaatatattccattttgattt 17263465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 22681518 - 22681443
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||    
T  22681518 gtgattcatcgtttttagcacaccttgtgcggggtgaatcactcttcttttgagcaatatattccattttgatttg 22681443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 248 - 338
Target Start/End: Original strand, 6459080 - 6459169
Alignment:
Q  248 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||| |||| |||| |||||||||| |||||||||||| |||||| |||||||||||| ||| |||||||||||||||||||||| |||||    
T  6459080 tgtatcagacattgagtgattcatcgcttttagcacac-ttgtgcagggtgaatcacttttcttttgagcaatatatttcattttgatttg 6459169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 247 - 332
Target Start/End: Complemental strand, 13428041 - 13427957
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttt 332  Q
    ||||||||||  ||| ||||||||||||||| | ||||||||||| ||||||||||||  ||| ||||||||||||||||||||||    
T  13428041 ttgtaacagacgttgggtgattcatcactttaa-cacaccttgtgtggggtgaatcacctttcttttgagcaatatatttcatttt 13427957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 7567037 - 7566946
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||  ||| ||||||  || ||||||||||||||| |||||||||||||| | ||| ||||||||||||||| |||||| |||||    
T  7567037 ttgtaacagactttgagtgatttgtcgcttttagcacaccttatgcggggtgaatcatttttcctttgagcaatatattccattttgatttg 7566946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 8752472 - 8752563
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||| |||||| ||| || ||||||||||||||||||||||||||||||| ||||   | ||||||| ||||| |||||||| |||||    
T  8752472 ttgtaacaaatattgagtgttttatcacttttagcacaccttgtgcggggtgaaacacttcgcttttgagctatataattcattttgatttg 8752563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 21120570 - 21120660
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||    ||||||||||||| ||||||||||||||||| ||||||||  | | ||||||||||||||| |||||| |||||    
T  21120570 ttgtaacagatattagaggattcatcacttt-agcacaccttgtgcgggatgaatcacactgcttttgagcaatatattccattttgatttg 21120660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 32215672 - 32215582
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||    ||||||||||||| ||||||||||||||||||||||||||| |   |||||| |||||||| |||||| |||||    
T  32215672 ttgtaacagatattagaggattcatcacttt-agcacaccttgtgcggggtgaatcactctgtttttgagtaatatattccattttgatttg 32215582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 38889910 - 38890000
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||  ||| ||| ||||||||||| || |||||||||||||||||||||||  ||| |||||||||||||||  ||||| |||||    
T  38889910 ttgtaacagacgttgggtgtttcatcacttt-agtacaccttgtgcggggtgaatcacctttcttttgagcaatatattctattttaatttg 38890000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 3091969 - 3092045
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatat 324  Q
    ||||||||||||||  ||||||||||||||| || ||||||| ||| |||||||||||| | | ||||||||||||||    
T  3091969 ttgtaacagatattaggtgattcatcacttt-agtacaccttatgcagggtgaatcactttgcttttgagcaatatat 3092045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 38651280 - 38651368
Alignment:
Q  248 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 337  Q
    ||||||||| |||  ||||||||||||||| |||| ||||| |||||||||||||||| | | ||||| ||||||||| |||||| ||||    
T  38651280 tgtaacagacattaggtgattcatcacttt-agcataccttatgcggggtgaatcactatgcttttgaacaatatattccattttgattt 38651368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 22358788 - 22358716
Alignment:
Q  246 cttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagca 318  Q
    |||||||| || |||| |||||||||  ||||||||||||||| |||||||||||||||| | | ||||||||    
T  22358788 cttgtaactgacattgggtgattcattgcttttagcacaccttatgcggggtgaatcactttgcttttgagca 22358716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 20398850 - 20398940
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||| |||||   ||||||| |||||| ||||||  |||| |||||||||||||| | | |||||||||||||||||||||| |||||    
T  20398850 ttgtaacaaatattagatgattcaccacttt-agcacattttgtacggggtgaatcactctgcttttgagcaatatatttcattttgatttg 20398940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 43656110 - 43656199
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||| ||||||||   |||||||||||||| ||||||||||||||||| ||||||||| | | |||||| |||||||| |||||| |||||    
T  43656110 ttgtatcagatattagatgattcatcacttt-agcacaccttgtgcgggatgaatcact-tacttttgagtaatatattccattttaatttg 43656199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 29802780 - 29802845
Alignment:
Q  259 ttgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatt 325  Q
    |||||||||||| ||||||||| |||| ||||||||||| ||||||| || ||||||| ||||||||    
T  29802780 ttgtgtgattcaccacttttagtacac-ttgtgcggggtaaatcacttttggtttgagtaatatatt 29802845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 45140197 - 45140135
Alignment:
Q  276 tttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||||||||||||||||||||||  ||| ||||| ||||||||  |||||| |||||    
T  45140197 tttagcacaccttgtgcggggtgaatcacctttcttttgaacaatatatcccattttaatttg 45140135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 644773 - 644884
Alignment:
Q  19 ggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattcttttttatggctt 118  Q
    |||||||||||||||||| |||||| || | || | ||||||||| || ||||||  ||  ||  |||||||||| ||||  || |||||||||||||||    
T  644773 ggcaatttggaaggagagaaacaactgtattttcaaaaatgcggttattgatcctttcagtattgttgaaagagtgaagctgaactcttttttatggctt 644872  T
Q  119 tctacaaatgtt 130  Q
    ||| | ||||||    
T  644873 tcttcgaatgtt 644884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 8752221 - 8752283
Alignment:
Q  16 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaa 78  Q
    ||||||||||||||| ||||| |||||||| ||||| ||| | ||||| || |||||||||||    
T  8752221 ttgggcaatttggaaagagagaaacaaccgagtcttcacataagcggttattgatcctcacaa 8752283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 17263147 - 17263209
Alignment:
Q  15 cttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcaca 77  Q
    |||||||||| |||||||| || |||||| |||| || | ||||||||| |||||||||||||    
T  17263147 cttgggcaatatggaaggatagaaacaactgtgtattaaaaaatgcggtaatcgatcctcaca 17263209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 13778314 - 13778245
Alignment:
Q  264 tgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcattttt 333  Q
    ||||||| || |||||||||||||| |||||| |||||   |  || |||||||||||||||||||||||    
T  13778314 tgattcaccatttttagcacaccttatgcgggatgaatacttcatcctttgagcaatatatttcattttt 13778245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 27294256 - 27294295
Alignment:
Q  265 gattcatcacttttagcacaccttgtgcggggtgaatcact 305  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  27294256 gattcatca-ttttagcacaccttgtgtggggtgaatcact 27294295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 193; Significance: 1e-104; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 17607401 - 17607727
Alignment:
Q  13 ttcttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattctttttta 112  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| ||||||| | |||||| ||||||| |||||||||||||    
T  17607401 ttcttgggcaatttggaaggtgaggaacaaccatgtctttacaaatgcggtcattgatccttacaacataactgaaagtgtaaagcctaattctttttta 17607500  T
Q  113 tggctttctacaaatgttgttcatattgctttcagtttccatgactagtggaggcatccgttgttatgtatgggtgtcttgtaatgttgtt--ttatttt 210  Q
    |||||||||||||||||||||| |||||| ||  | || ||||| | |||||||||||||||||||||||||| |||| |||||| || ||  ||  |||    
T  17607501 tggctttctacaaatgttgttcctattgccttttgctttcatgattggtggaggcatccgttgttatgtatggatgtcatgtaat-ttcttaatttattt 17607599  T
Q  211 tggtggaggcaacctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcg 310  Q
      ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||    
T  17607600 cagtggaggcaacctttggtttttggtgccatgatcttgtaacagatattgtgtgattcatcacttttaacacaccttgtgcgaggtgaatcactgtccg 17607699  T
Q  311 tttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||| ||||||||||||    
T  17607700 tttgagcaatatattccatttttatttg 17607727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 12915742 - 12915833
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||| ||||| ||| ||||||||||| ||||| ||||||||||| |||||||||||||  ||||||||||||||||||||||||| |||||    
T  12915742 ttgtatcagattttgcgtgattcatcagttttaacacaccttgtgtggggtgaatcacttctcgtttgagcaatatatttcattttgatttg 12915833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 45701280 - 45701190
Alignment:
Q  248 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||| |||||||||||| ||| ||| ||||||||||| |||||| |||||    
T  45701280 tgtaacagacattgagtgattcatcgcttttagcacaccttgtgctgggtgaatcacttttcttttaagcaatatattccattttgatttg 45701190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 2220187 - 2220099
Alignment:
Q  250 taacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||| |||||| ||||||||||||||||||||||| |||||  | ||||||||||| ||||||||||||||||| | |||||| |||||    
T  2220187 taacggatattatgtgattcatcacttttagcacatcttgtatgaggtgaatcacttttcgtttgagcaatataatccattttgatttg 2220099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 1206420 - 1206511
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||| ||||| ||| |||||||| |||||||||||| |||||||||||||||||||   | | |||||||||||||||||||||| |||||    
T  1206420 ttgtatcagattttgagtgattcaccacttttagcacgccttgtgcggggtgaatcatcttccatttgagcaatatatttcattttgatttg 1206511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 42184089 - 42184160
Alignment:
Q  259 ttgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatt 330  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||    
T  42184089 ttgtatgattcaccacttttagcacatcttgtgcggggtgaatcactgttggtttgagtaatatattccatt 42184160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 238 - 338
Target Start/End: Original strand, 28543749 - 28543849
Alignment:
Q  238 gccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 337  Q
    ||||| || ||||||||||| ||| |||||||| |||||||||||| ||||||  || |||||||||| |  |||||||||||||||| |||||| ||||    
T  28543749 gccatgtttttgtaacagattttgagtgattcaccacttttagcacgccttgtatggagtgaatcactttcggtttgagcaatatattccattttaattt 28543848  T
Q  338 g 338  Q
    |    
T  28543849 g 28543849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 248 - 338
Target Start/End: Original strand, 3376120 - 3376209
Alignment:
Q  248 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||  ||| ||||||||||  ||||||||||||||||||||||||||||||| ||| |||||| ||||||||  ||||| |||||    
T  3376120 tgtaacagactttgagtgattcatcg-ttttagcacaccttgtgcggggtgaatcactcttcttttgagtaatatattctattttgatttg 3376209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 245 - 338
Target Start/End: Complemental strand, 30515876 - 30515784
Alignment:
Q  245 tcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||| | || |||| |||||||||||||||||| ||||||||||||||||||||||||   | ||||||| ||||||| |||||| |||||    
T  30515876 tcttgtacctgacattgggtgattcatcacttttagtacaccttgtgcggggtgaatcactccgcttttgagc-atatattacattttgatttg 30515784  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 10005232 - 10005322
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||    ||||||||||||| ||||||||||||||||||||||| ||| | | ||||| ||||||||||||| || |||||    
T  10005232 ttgtaacagatattagaggattcatcacttt-agcacaccttgtgcggggtgaataactctgcctttgaacaatatatttcatattgatttg 10005322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 28210070 - 28209995
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||| |||||||||||||||||||||||||||||||| ||||| || |||   |||||||||| |||||| |||||    
T  28210070 gtgagtcatcacttttagcacaccttgtgcggggtgattcacttttggttgttgcaatatattccattttgatttg 28209995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 41647219 - 41647140
Alignment:
Q  259 ttgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||||| |||||| ||||||||||||||  ||||||||||| |  ||||||| |||||||| |||||| |||||    
T  41647219 ttgtgtgattcaccactttcagcacaccttgtgcaaggtgaatcactttcggtttgagtaatatattgcattttaatttg 41647140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 45468243 - 45468152
Alignment:
Q  248 tgtaacagatattgtgtgattcatcacttttagcacacc-ttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||| ||| |||| |||||||||| ||||||||||||| || ||||| |||||||||| ||| ||||| ||||||||| |||||| |||||    
T  45468243 tgtaaaagacattgagtgattcatcgcttttagcacacctttatgcggagtgaatcacttttcttttgaacaatatattccattttgatttg 45468152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 3203243 - 3203326
Alignment:
Q  256 atattgtgtgattcatcacttttagcacaccttgtgcgg-ggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||||||| |||   ||||||||||||| |||||||||||  | ||||||||||||||  ||||||| |||||    
T  3203243 atattgtgtgattcatcacctttttaacaccttgtgcggaggtgaatcacttcttgtttgagcaatataactcattttgatttg 3203326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 33006781 - 33006691
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||| |||||||  ||||||||||||||| || ||||||||| || ||||||||||| | | |||||| ||||||||| ||||| |||||    
T  33006781 ttgtaagagatattaggtgattcatcacttt-aggacaccttgtacgaggtgaatcactttacttttgagtaatatattttattttgatttg 33006691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 39994657 - 39994747
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||    ||||||||| |||||||||||||||| |||||||||||||| |   |||||| |||||||| |||||| |||||    
T  39994657 ttgtaacagatattagaggattcatca-ttttagcacaccttgtacggggtgaatcactatatttttgagtaatatattccattttgatttg 39994747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 11123652 - 11123705
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaat 301  Q
    ||||||||||  ||| ||||||||||| |||||||||||||||||||||||||||    
T  11123652 ttgtaacagacgttgggtgattcatca-ttttagcacaccttgtgcggggtgaat 11123705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 338
Target Start/End: Original strand, 26404989 - 26405075
Alignment:
Q  253 cagatattgtgtgatt-catcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||| ||||||| || |||||||||||||  ||| ||||| | ||||||| |||||||||| |||||||| |||||| |||||    
T  26404989 cagatattatgtgatttcaccacttttagcacattttgggcgggataaatcacttttcgtttgagaaatatattccattttgatttg 26405075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 42183810 - 42183888
Alignment:
Q  15 cttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagt 93  Q
    |||||| ||| |||||||| |||||||| |||||||| | |||||| || | ||||||||||||  |||||||||||||    
T  42183810 cttgggtaatatggaaggaaaggaacaatcgtgtcttcaaaaatgcagttaccgatcctcacaatctcattgaaagagt 42183888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 247 - 332
Target Start/End: Original strand, 32603304 - 32603388
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttt 332  Q
    |||||||||| |||| |||||||||||||||||| ||| ||| |  ||||||||||||| |   |||||| |||||||||||||||    
T  32603304 ttgtaacagacattgggtgattcatcacttttagtacatcttatatggggtgaatcact-tagctttgagaaatatatttcatttt 32603388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 26438353 - 26438410
Alignment:
Q  267 ttcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatt 325  Q
    ||||||||||| |||||||||||||| |||||||||||  ||| ||||| |||||||||    
T  26438353 ttcatcacttt-agcacaccttgtgcagggtgaatcacctttcttttgaacaatatatt 26438410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 7677093 - 7676772
Alignment:
Q  16 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattcttttttatgg 115  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | | |||||||||||||||||||||||||||||    
T  7677093 ttgggtaatttggaaggcgaggaacaaccgtgtctttacaaatgcggccatcgatcctcacaacataactaaaagagtaaagcgtaattcttttttatgg 7676994  T
Q  116 ctttctacaaatgttgttcatattgctttcagtttccatgactagtggaggcatccgttgttatgtatgggtgtcttgtaatgttgttttatttttggtg 215  Q
    || || ||||||||||||| ||||||||| || || || || | ||||||||||||| |||||||||||| |||| |||||| |||||||| ||||||||    
T  7676993 ctctccacaaatgttgttcctattgcttttagctttcacgattggtggaggcatccgctgttatgtatggatgtcatgtaattttgtttta-ttttggtg 7676895  T
Q  216 gaggcaacctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttga 315  Q
    ||||||||||||| ||||||||| |||  |||||||||||||||||||||||||||||||||||| ||||  | ||| |||||| ||||||| | |||||    
T  7676894 gaggcaacctttgatttttggtgtcatgatcttgtaacagatattgtgtgattcatcacttttagtacacgatttgcagggtgattcactgtccatttga 7676795  T
Q  316 gcaatatatttcatttttatttg 338  Q
    |||||||||| ||||||||||||    
T  7676794 gcaatatattccatttttatttg 7676772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 30188542 - 30188630
Alignment:
Q  250 taacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||| ||||||||||||||||| |||||||| || ||||||||||||||||  |||||||||||||||||||  |||||||||||    
T  30188542 taacagattttgtgtgattcatcactcttagcacatctagtgcggggtgaatcacctttcgtttgagcaatatattctatttttatttg 30188630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 7638978 - 7638887
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||||||   |||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||| |||||| |||||    
T  7638978 ttgtaacagatatctagtgattcatcacttttagtacaccttatgcggggtgaatcacttttcgtttgagtaatatattccattttgatttg 7638887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 7937443 - 7937533
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||  ||| ||||||||||||||| |||||||||||||| ||| |||||||| | | ||||||||||| ||| |||||| |||||    
T  7937443 ttgtaacagactttgggtgattcatcacttt-agcacaccttgtgcagggggaatcactctgcctttgagcaatagattccattttgatttg 7937533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 10752221 - 10752312
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||  ||| |||||||| |||||||| |||||||||| ||||||||||| || | | |||||||||||||||  ||||| |||||    
T  10752221 ttgtaacagactttgggtgattcaccacttttaacacaccttgtacggggtgaatccctctacatttgagcaatatattctattttgatttg 10752312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 21477833 - 21477743
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||    ||||||||| ||||||||||||||||||||||||||||||| |   |||||| |||||||| |||||| |||||    
T  21477833 ttgtaacagatattagaggattcatca-ttttagcacaccttgtgcggggtgaatcactctgtctttgagtaatatattccattttgatttg 21477743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 10773250 - 10773312
Alignment:
Q  276 tttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||  |||||| |||||    
T  10773250 tttagcacaccttgtgcggggtgaatcacctttcttttgagcaatatatcccattttgatttg 10773312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 16898626 - 16898716
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||| |||||   |||||||||||||| ||||||  |||||||| |||||||||| | | |||||||||||||| ||||||| |||||    
T  16898626 ttgtaacatatattagatgattcatcacttt-agcacattttgtgcggagtgaatcactttgcttttgagcaatatatctcattttgatttg 16898716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 19667558 - 19667499
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatat 322  Q
    |||||||||||||||||||| |||||||||||||||| | ||| | | ||||||||||||    
T  19667558 gtgattcatcacttttagcataccttgtgcggggtgattaactttgcttttgagcaatat 19667499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 29685632 - 29685702
Alignment:
Q  268 tcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||| ||| ||||||| |||||||||||| ||  |||||||||||||||  ||||| |||||    
T  29685632 tcatcacttttagtacatcttgtgcagggtgaatcactattattttgagcaatatattctattttgatttg 29685702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 12215524 - 12215563
Alignment:
Q  265 gattcatcacttttagcacaccttgtgcggggtgaatcact 305  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  12215524 gattcatca-ttttagcacaccttgtgcggggtgaatcact 12215563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 19667806 - 19667752
Alignment:
Q  16 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgat 70  Q
    ||||| ||||||||||||||| ||||||  |||||||| ||||||||| ||||||    
T  19667806 ttgggaaatttggaaggagagaaacaactttgtctttaaaaatgcggttatcgat 19667752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 25280451 - 25280391
Alignment:
Q  278 tagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||| |||||||||||||||||| |  || |||||| |||||||| |||||| |||||    
T  25280451 tagcacatcttgtgcggggtgaatcattcctcttttgagtaatatattccattttgatttg 25280391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 467 - 690
Target Start/End: Original strand, 52449531 - 52449761
Alignment:
Q  467 tattgtttgtgtaaaaactgaataaaccgaaccgactctaatcacatataattggtttggg-ttggannnnnnnn----aaccatccaaaatcaaattgt 561  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||  |||| |||||            |||||||||||||||| ||||    
T  52449531 tattgtttgtgtaaaaactgaataaactgaaccgactctaatcgcatataattggactggggttggatttttttttatgaaccatccaaaatcaagttgt 52449630  T
Q  562 acattatttttgtcttctgattagataatattttgtttttaaatcgatccaaaccacaccataactcctacctgctataacaat-aacataatgagcaaa 660  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||| || ||||||||| |||||||||||| || ||||||||||||    
T  52449631 acattatttttgtcttttgattagataattttttgtttttaaatcgatccaaacaacatcaaaactcctacatgctataacaataaatataatgagcaaa 52449730  T
Q  661 ccaatgctagac-ttcatgaatagatgatag 690  Q
     ||||||||||| ||||||||||||||||||    
T  52449731 gcaatgctagactttcatgaatagatgatag 52449761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 179 - 338
Target Start/End: Complemental strand, 46191356 - 46191197
Alignment:
Q  179 tgtatgggtgtcttgtaatgttg-ttttattttt-ggtggaggcaacctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcactt 276  Q
    |||||||||||| |||||| ||| |||||||||| ||||| |||| ||||||||||  |||||| |||||||||||||||||||  |||| |||||| ||    
T  46191356 tgtatgggtgtcatgtaattttggttttattttttggtggtggcatcctttggttt--ggtgcctttttcttgtaacagatattcagtgagtcatcattt 46191259  T
Q  277 ttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  46191258 ttagcacacattgtgcggggtgaatcacttttcgtttgagcaatatattccattttgatttg 46191197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 13159792 - 13159701
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  13159792 ttgtaacatatattttgtgattcaccacttttagcacactttgtgcggggtgaatcacttttcgtttgagcaatatattccattttgatttg 13159701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 44546612 - 44546703
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||  ||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||    
T  44546612 ttgtaacagactttgagtgattcgtcgcttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttg 44546703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 135895 - 135823
Alignment:
Q  265 gattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| |||||    
T  135895 gattcatcactcttagcacaccttgtacggggtgaatcact-ttcgtttgagcaatatattccattttgatttg 135823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 233 - 338
Target Start/End: Complemental strand, 20177484 - 20177380
Alignment:
Q  233 ttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttt 332  Q
    |||||||||| || ||||| |||||||| |||||||||||||||||| || | |||||||| ||||||||||| |||| ||||||||||||||  |||||    
T  20177484 ttggtgccatgtt-ttgtatcagatattatgtgattcatcacttttaacatatcttgtgcgaggtgaatcacttttcgattgagcaatatattcgatttt 20177386  T
Q  333 tatttg 338  Q
     |||||    
T  20177385 gatttg 20177380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 52449467 - 52449530
Alignment:
Q  377 taacatggatatttaatttgtagtttaaaccaaatattcatcttaatgccaacatttatatatt 440  Q
    ||||||| ||| |||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  52449467 taacatgaataattaatttgtaattcaaaccaaatattcatcttaatgccaacatttatatatt 52449530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 55284947 - 55284843
Alignment:
Q  235 ggtgccattttctt-gtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcattttt 333  Q
    |||||||||||||| ||||||||| ||   || |||| ||||||||||||||||| |||||||||||||||| ||  ||| |||||||||||| |||||     
T  55284947 ggtgccattttctttgtaacagatttttaatgtttcaccacttttagcacaccttatgcggggtgaatcactattattttcagcaatatattttattttg 55284848  T
Q  334 atttg 338  Q
    |||||    
T  55284847 atttg 55284843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 1463319 - 1463410
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||  ||| |||||||||||||||||||||||||| |||||||||||| ||| | | |||||||||| |||  |||||| |||||    
T  1463319 ttgtaacagactttgagtgattcatcacttttagcacaccttatgcggggtgaatgactttgcctttgagcaatttataccattttgatttg 1463410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 263 - 338
Target Start/End: Original strand, 17186270 - 17186345
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||  |||||||| |||||||||||| ||||||||| ||| ||||||||||||||| |||||| |||||    
T  17186270 gtgattcatcgtttttagcataccttgtgcgggatgaatcactcttcttttgagcaatatattccattttgatttg 17186345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 21141909 - 21142000
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||  |||||||||||||| |||||||| ||  |||||||||||||||||||||  | ||||||||||||||||  ||||| |||||    
T  21141909 ttgtaacaattattgtgtgattcaccacttttaacatgccttgtgcggggtgaatcactcctggtttgagcaatatattctattttgatttg 21142000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 42396789 - 42396699
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||| |||| ||| ||||||||||| |||| |||||||||||||| ||||||  ||| ||||||||||||||| |||||| |||||    
T  42396789 ttgtaacagacattgggtgtttcatcacttt-agcataccttgtgcggggtaaatcacctttcttttgagcaatatattccattttaatttg 42396699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 248 - 338
Target Start/End: Original strand, 39868311 - 39868400
Alignment:
Q  248 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||  ||| ||||||||||  ||||||||||||||||||||||||| ||||| ||| ||| ||||||||||| |||||| |||||    
T  39868311 tgtaacagacgttgagtgattcatcg-ttttagcacaccttgtgcggggtgagtcactcttcttttcagcaatatattccattttgatttg 39868400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 16736246 - 16736171
Alignment:
Q  264 tgattcatcacttttagcacaccttgtgcggggtgaatca-ctgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||||||||| ||| || |||||||||||  | ||||||||||||||||| |||||||| |||||    
T  16736246 tgattcatcacttttagcacatcttatgtggggtgaatcattttttcgtttgagcaatataattcattttgatttg 16736171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 21141678 - 21141777
Alignment:
Q  16 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattcttttttatgg 115  Q
    ||||||||| |||||||| | ||||||||| ||||| | ||||| ||| | ||||||||||||||||||||||| ||| ||||  ||||| || ||||||    
T  21141678 ttgggcaatatggaaggaaaagaacaaccgcgtcttgaaaaatgtggtaaccgatcctcacaacatcattgaaaaagttaagctaaattccttcttatgg 21141777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 26893331 - 26893421
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||| |||| ||| ||||||||||||||| |||||||||||||| |||||||| ||  ||| ||||||||||| ||| |||||| |||||    
T  26893331 ttgtaatagatgttgggtgattcatcacttt-agcacaccttgtgcagggtgaattacctttcttttgagcaatacattccattttgatttg 26893421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 28709150 - 28709240
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||| |||||||||  ||||||||||| || |||||| |||||||||||||||||| |  || |||||| ||||||||||||||| |||||    
T  28709150 ttgtatcagatattggatgattcatcacgtt-agcacatcttgtgcggggtgaatcattcctcttttgagtaatatatttcattttgatttg 28709240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 28740816 - 28740873
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcac 304  Q
    |||||||||||||| ||||| ||||||||||| ||||| ||||||| |||||||||||    
T  28740816 ttgtaacagatattatgtgaatcatcacttttggcacatcttgtgctgggtgaatcac 28740873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 135943 - 135895
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggg 295  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  135943 ttgtagcagatattgtgtgattcatcactcttagcacaccttgtacggg 135895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 17712765 - 17712675
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||    ||||||||||||| ||||||||||||||||||||||||||| |   | |||| |||||||| |||||| |||||    
T  17712765 ttgtaacagatattagaggattcatcacttt-agcacaccttgtgcggggtgaatcactctgtttctgagtaatatattccattttgatttg 17712675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 22322490 - 22322415
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||| |||||||||||||| |||||| ||||||||| | | ||||| |||| |||| |||||| |||||    
T  22322490 gtgattcatcatttttagcacaccttatgcgggatgaatcactttgcttttgaacaatttattccattttgatttg 22322415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 263 - 338
Target Start/End: Original strand, 24010498 - 24010573
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||| ||| |||||||||  ||||||||||||||||||||| ||| ||||| |||||||||  ||||| |||||    
T  24010498 gtgatttatcgcttttagcatgccttgtgcggggtgaatcactcttcatttgaacaatatattcaattttgatttg 24010573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 263 - 338
Target Start/End: Original strand, 52762930 - 52763004
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||| | |||||||||| || ||||||||||| | | ||||||||||||||| |||||| |||||    
T  52762930 gtgattcatcactttaa-cacaccttgtacgaggtgaatcactatacttttgagcaatatattccattttaatttg 52763004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 7272679 - 7272745
Alignment:
Q  259 ttgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatt 325  Q
    |||||||||||| |||| |||||||||||| | |||||||||||||| ||  |||||| ||||||||    
T  7272679 ttgtgtgattcaccactgttagcacaccttatacggggtgaatcactattaatttgagtaatatatt 7272745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 11821501 - 11821567
Alignment:
Q  267 ttcatcacttttagcacaccttgtgc-ggggtgaatcactgttcgtttgagcaatatatttcatttt 332  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||  ||||||||| ||||| |||||    
T  11821501 ttcatcgcttttagcacaccttgtgcgggggtgaatcactcttctattgagcaatgtattttatttt 11821567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 14546443 - 14546389
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaat 301  Q
    |||||| |||||||| || ||||| ||||||||||||||||| ||||||||||||    
T  14546443 ttgtaatagatattgagtaattcaccacttttagcacaccttatgcggggtgaat 14546389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 34684017 - 34684118
Alignment:
Q  237 tgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatt 336  Q
    |||||| ||||||||||| | ||||||| ||||| |||||||| |||||||||| | ||||||||  || || |  ||| |||||| ||||||||| |||    
T  34684017 tgccatcttcttgtaacaaacattgtgtaattcaccacttttaacacaccttgtacagggtgaattgctcttggcatgaacaatatttttcattttgatt 34684116  T
Q  337 tg 338  Q
    ||    
T  34684117 tg 34684118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 36825871 - 36825780
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatca-ctgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||| |||||| ||| |||||||||||| |||| |||||||| | |||||||||||| || |||||  |||||||||||| |||||| |||||    
T  36825871 ttgtcacagattttgggtgattcatcac-tttaacacaccttatacggggtgaatcaccttttcgtgcgagcaatatattccattttgatttg 36825780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 48782602 - 48782510
Alignment:
Q  247 ttgtaacagatattgtgtgatt-catcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||  |||| ||||| || ||| ||||| |||||||||| ||||||||||| | |  ||||||||||| ||||||||||| |||||    
T  48782602 ttgtaacagagtttgtctgatttcaccacgtttagtacaccttgtgtggggtgaatcaatttcggtttgagcaatttatttcattttgatttg 48782510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 37013995 - 37013920
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||| ||||||||| ||||| || |||||||| || | | | ||||||||||||||| |||||| |||||    
T  37013995 gtgattcatcgcttttagcataccttatgtggggtgaaccattctccttttgagcaatatattccattttgatttg 37013920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 3e-44; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 15 - 338
Target Start/End: Original strand, 23256917 - 23257240
Alignment:
Q  15 cttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattcttttttatg 114  Q
    |||||| |||||||||||| || |||||| |||||||| | |||||||| || |||  |||||||||| |||||| ||| ||||| ||||||||||||||    
T  23256917 cttgggaaatttggaaggatagaaacaacagtgtcttttccaatgcggttattgatattcacaacatccttgaaaaagtgaagcgcaattcttttttatg 23257016  T
Q  115 gctttctacaaatgttgttcatattgctttcagtttccatgactagtggaggcatccgttgttatgtatgggtgtcttgtaatgttgtttta--tttttg 212  Q
    | | ||| | ||| || |||  ||||||||   ||| ||||| | |||||| || ||  |  | |||||||||||| |||||| || ||||   ||||||    
T  23257017 gatctcttcgaatattattccaattgcttttgattttcatgattggtggagacacccacttctgtgtatgggtgtcatgtaattttctttttattttttg 23257116  T
Q  213 gtggaggcaacctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtt 312  Q
    |||| |||| ||||||||||  |||||| | ||  |||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  23257117 gtggtggcatcctttggttt--ggtgccttgtttgtgtagcagatattgggtgattcatcggttttagcacaccttgtgcggggtgaatcacttttcgtt 23257214  T
Q  313 tgagcaatatatttcatttttatttg 338  Q
    ||| ||||||||| |||||| |||||    
T  23257215 tgaacaatatattccattttgatttg 23257240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 37268317 - 37268408
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||  ||| ||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| |||||| |||||    
T  37268317 ttgtaacagactttgagtgattcgtcacttttagcacaccttgtacggggtgaatcacttttcctttgagcaatatattccattttgatttg 37268408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 26397361 - 26397288
Alignment:
Q  265 gattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||    
T  26397361 gattcatcatttttagcacaccttgtgcggggtgaatcactcttcttttgagcaatatattccattttgatttg 26397288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 21269972 - 21269881
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||| |||||| || ||||| |||||||||||||||||||||||||||||| ||| || ||||||| |||||||  |||||| |||||    
T  21269972 ttgtaacatatattgagtaattcaccacttttagcacaccttgtgcggggtgaattacttttggtttgagtaatatataccattttgatttg 21269881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 21271986 - 21271895
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||| |||||| || ||||| |||||||||||||||||||||||||||||| ||| || ||||||| |||||||  |||||| |||||    
T  21271986 ttgtaacatatattgagtaattcaccacttttagcacaccttgtgcggggtgaattacttttggtttgagtaatatataccattttgatttg 21271895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 38099554 - 38099644
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||| | || ||||||| |||||||| |||||| |||||    
T  38099554 ttgtaatagatattgtgttattcatcactcttatcacaccttgtgcggggtgaatca-tttttgtttgagtaatatattccattttgatttg 38099644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 275 - 338
Target Start/End: Complemental strand, 40632713 - 40632650
Alignment:
Q  275 ttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  40632713 ttttagcacaccttatgcggggtgaatcactcttcttttgagcaatatatttcattttgatttg 40632650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 263 - 337
Target Start/End: Complemental strand, 7124008 - 7123934
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 337  Q
    |||||||||||||||||||||||||| |||||| ||||||||| | | |||||| ||||||||||||||| ||||    
T  7124008 gtgattcatcacttttagcacaccttatgcgggttgaatcactttgcttttgagaaatatatttcattttgattt 7123934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 248 - 332
Target Start/End: Original strand, 24251286 - 24251370
Alignment:
Q  248 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttt 332  Q
    ||||||| | |||| ||||||||||||||||| |||||||||||||||||||||||||   | ||||| |||||||||| |||||    
T  24251286 tgtaacatacattgggtgattcatcacttttaacacaccttgtgcggggtgaatcacttagcttttgaacaatatattttatttt 24251370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 17945967 - 17945877
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||    ||||||||| ||||||||||||||||||||||||||||||| |   |||||| |||||||| |||||| |||||    
T  17945967 ttgtaacagatattagaggattcatca-ttttagcacaccttgtgcggggtgaatcactctgtttttgagtaatatattccattttgatttg 17945877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 21825219 - 21825282
Alignment:
Q  276 tttagcacaccttgtgcggggtgaatca-ctgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||||||||||||||||||||| || ||| ||||||||||||||| |||||| |||||    
T  21825219 tttagcacaccttgtgcggggtgaatcaccttttcttttgagcaatatattccattttgatttg 21825282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 252 - 338
Target Start/End: Complemental strand, 9194631 - 9194545
Alignment:
Q  252 acagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||| ||| |||||||||| || ||||||| ||||||||||| ||||||||| | | ||  |||||||||||||||||| |||||    
T  9194631 acagatcttgggtgattcatcgctcttagcacgccttgtgcgggatgaatcactctcctttaaagcaatatatttcattttgatttg 9194545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 247 - 337
Target Start/End: Complemental strand, 18149453 - 18149364
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 337  Q
    ||||| |||| |||| ||| |||| |||||| |||||||||||||||||||||| |||  | | |||||||||||||||||||||| ||||    
T  18149453 ttgtatcagacattgggtgtttcaccacttt-agcacaccttgtgcggggtgaaccaccttacttttgagcaatatatttcattttgattt 18149364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 265 - 338
Target Start/End: Original strand, 1585473 - 1585545
Alignment:
Q  265 gattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||| |||||||||||| |||||||||||||| | | |||||||||||||||  ||||| |||||    
T  1585473 gattcatcacttt-agcacaccttgtacggggtgaatcactctgcttttgagcaatatattcaattttgatttg 1585545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 338
Target Start/End: Original strand, 39565366 - 39565448
Alignment:
Q  254 agatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||| |||||||||||||||||| | ||||||| |||||||||| | ||| ||||||| ||||||| |||||| |||||    
T  39565366 agatattgtgcgattcatcacttttagcaaatcttgtgc-gggtgaatcaattttcatttgagc-atatattccattttaatttg 39565448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 33651254 - 33651312
Alignment:
Q  245 tcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatca 303  Q
    ||||||| | ||||||| ||||||||||||||||| |||||||||||| || |||||||    
T  33651254 tcttgtatctgatattgggtgattcatcacttttaacacaccttgtgcaggatgaatca 33651312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 13390415 - 13390354
Alignment:
Q  277 ttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||| ||||||||||||||||||||  || ||||||| ||||||| |||||| |||||    
T  13390415 ttagcacatcttgtgcggggtgaatcacttctcttttgagctatatattccattttgatttg 13390354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 9194862 - 9194758
Alignment:
Q  16 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattcttttttatgg 115  Q
    |||| |||||||||||||||| |||||| || |||| | ||||||||| || ||||||||||| ||  | ||||  || ||||  ||||| |||||||||    
T  9194862 ttggacaatttggaaggagagaaacaactgtatcttcaaaaatgcggtaattgatcctcacaatatagtcgaaaaggtgaagctgaattcctttttatgg 9194763  T
Q  116 ctttc 120  Q
    |||||    
T  9194762 ctttc 9194758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 15504881 - 15504971
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||    ||||||||| ||||| ||||||||||||||||||||||||| |   ||| || |||||||| |||||| |||||    
T  15504881 ttgtaacagatattagaagattcatca-ttttaacacaccttgtgcggggtgaatcactctatttttaagtaatatattccattttgatttg 15504971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 23264175 - 23264113
Alignment:
Q  276 tttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||||||||||||| ||||  ||  |||||||||||||  |||||| |||||    
T  23264175 tttagcacaccttgtgcggggtgaaacactactctattgagcaatatatcccattttgatttg 23264113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 17696107 - 17696036
Alignment:
Q  266 attcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||| ||||||||||||||||||||| ||||||||| |   |||||| ||||||||  ||||| |||||    
T  17696107 attcatca-ttttagcacaccttgtgcgggatgaatcactctgtttttgagtaatatattctattttgatttg 17696036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 12527263 - 12526943
Alignment:
Q  17 tgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattcttttttatggc 116  Q
    ||||||||||||||||| || |||||| |||||||||| |||||||| ||||||  |||||||||| |||||| ||| ||||| ||||| |||||||||     
T  12527263 tgggcaatttggaaggatagaaacaactgtgtctttaccaatgcggttatcgatattcacaacatccttgaaaaagtgaagcgcaattc-tttttatgga 12527165  T
Q  117 tttctacaaatgttgttcatattgctttcagtttccatgactagtggaggcatccgttgttatgtatgggtgtcttgtaatgttg-ttttatt-tttggt 214  Q
    ||||| | ||| || |||  ||||||||   ||| ||||| | || ||| || ||  |  | |||||||||||| |||||| ||| ||||||| ||||||    
T  12527164 tttcttctaatattattccaattgcttttgattttcatgattggtcgagacacccacttctgtgtatgggtgtcatgtaattttgtttttattatttggt 12527065  T
Q  215 ggaggcaacctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttg 314  Q
    || |||| |||||||  ||||||||| | || ||||| || |||| | |||||| |||| |||| ||| ||||| | | || | ||||||| ||| ||||    
T  12527064 ggtggcatcctttgg--tttggtgccttgtttttgtatcaaatatcgggtgatttatcaatttttgcaaaccttatacaggattaatcacttttcatttg 12526967  T
Q  315 agcaatatatttcatttttatttg 338  Q
    |||||||||||||||||| |||||    
T  12526966 agcaatatatttcattttgatttg 12526943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 10349521 - 10349612
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||| |||||    
T  10349521 ttgtaacagatattttgtgattcatcacttttagcacaccttgtgcagggtgaatcactttcagtttgagcaatatattccattttgatttg 10349612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 20819680 - 20819605
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||  |||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||||| |||||    
T  20819680 gtgattcatcgtttttagcacaccttgtgctgggtgaatcacttttcttttgagcaatatattccattttgatttg 20819605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 39581405 - 39581483
Alignment:
Q  247 ttgtaacagatattgtgtgatt-catcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatat 324  Q
    ||||| |||||||| ||||||| |||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||    
T  39581405 ttgtatcagatattttgtgatttcatcacttttagcatatcttgtgcggggtgaatcactattcgtttgaacaatatat 39581483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 24509393 - 24509319
Alignment:
Q  263 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||  ||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||| |||||    
T  24509393 gtgattcatcgtttttagcacaccttgtgcggg-tgaatcactcttcttttgagcaatatattccattttgatttg 24509319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 12396417 - 12396356
Alignment:
Q  255 gatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagca 318  Q
    |||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  12396417 gatattgtatgattcatcactcttagcacaccttgtgc-gggtgaatcact-ttcgtttgagca 12396356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 7637702 - 7637640
Alignment:
Q  276 tttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||  |||||| |||||    
T  7637702 tttagcacaccttgtgcggggtgaatcacctttcttttgagcaatatatcccattttgatttg 7637640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 33567477 - 33567412
Alignment:
Q  13 ttcttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaa 78  Q
    |||||||||||| |||||||| || |||||||||| ||| | ||||||||| ||||||||||||||    
T  33567477 ttcttgggcaatatggaaggatagaaacaaccgtgccttaaaaaatgcggtaatcgatcctcacaa 33567412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 1870486 - 1870562
Alignment:
Q  264 tgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgct 340  Q
    ||||||| || ||||||||||| ||||||| |||||||| ||  || ||||||||||||||||||| || |||||||    
T  1870486 tgattcaccatttttagcacacgttgtgcgtggtgaatctcttctcctttgagcaatatatttcatcttgatttgct 1870562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 24308369 - 24308279
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||| ||| |||||||| || |||||| ||||||||||||||||||||   |  |  |||||||||||||||||||||| |||||    
T  24308369 ttgtaacagattttgggtgattcacca-ttttagtacaccttgtgcggggtgaatttatccttctttgagcaatatatttcattttgatttg 24308279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 24308594 - 24308541
Alignment:
Q  22 aatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctca 75  Q
    |||||||||||| || |||||||||||||| | |||||| || |||||||||||    
T  24308594 aatttggaaggatagaaacaaccgtgtcttcaaaaatgctgtaatcgatcctca 24308541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 17936326 - 17936417
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||  ||| ||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  17936326 ttgtaacagactttgagtgattcgtcgcttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatatttcattttgatttg 17936417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 248 - 338
Target Start/End: Original strand, 15172800 - 15172890
Alignment:
Q  248 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||| |||||||||||||||||||||||  |||| |||||||||||||| |||||||||| |||||||| |||||| |||||    
T  15172800 tgtaacagatattatgtgattcatcacttttagcacatattgttcggggtgaatcactcttcgtttgagaaatatattccattttaatttg 15172890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 39143298 - 39143374
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatat 324  Q
    ||||||||||||||  ||||||||||||||| | ||||||||||||||||||||||||| | | ||||||||||||||    
T  39143298 ttgtaacagatattaggtgattcatcacttt-accacaccttgtgcggggtgaatcactttgcttttgagcaatatat 39143374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 15353331 - 15353423
Alignment:
Q  245 tcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||| | || |||| |||||||||||||||| | |||||||||||||| |||||||||   | ||||||| |||||||||||||| |||||    
T  15353331 tcttgtatctgacattgggtgattcatcacttttggtacaccttgtgcgggatgaatcactccgcttttgagc-atatatttcattttgatttg 15353423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 29934709 - 29934770
Alignment:
Q  277 ttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||||||||||||||||   || ||||||||||||||| |||||| |||||    
T  29934709 ttagcacaccttgtgcggggtgaatcacctctcttttgagcaatatattccattttgatttg 29934770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 39919412 - 39919336
Alignment:
Q  224 ctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaat 301  Q
    |||||||||| ||||||  ||  |||||||||| |||| ||||||||||| |||||||||||||||||| ||||||||    
T  39919412 ctttggttttaggtgcctgttgtttgtaacagacattgggtgattcatca-ttttagcacaccttgtgcagggtgaat 39919336  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 21313795 - 21313870
Alignment:
Q  264 tgattcatcacttttagcacaccttgtgcggggtgaatca--ctgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||| |||||||||||||||| ||||||||||||  |||||  |||||| |||||||| |||||| |||||    
T  21313795 tgattcatca-ttttagcacaccttgtacggggtgaatcattctgtttttttgagtaatatattccattttgatttg 21313870  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 9018047 - 9018142
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcgggg-----tgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||  |||||||||||| ||||||||||||| |||| ||     ||||||||| | | ||||||||||||||| |||||| |||||    
T  9018047 ttgtaacagatattaggtgattcatcac-tttagcacaccttatgcgaggtgaattgaatcactttgcttttgagcaatatattccattttaatttg 9018142  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 1219198 - 1219259
Alignment:
Q  277 ttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||| |||||||||||||||||| |  |  |||||| ||||||||||||||| |||||    
T  1219198 ttagcacatcttgtgcggggtgaatcaattctattttgagtaatatatttcattttgatttg 1219259  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 300
Target Start/End: Complemental strand, 20877308 - 20877279
Alignment:
Q  271 tcacttttagcacaccttgtgcggggtgaa 300  Q
    ||||||||||||||||||||||||||||||    
T  20877308 tcacttttagcacaccttgtgcggggtgaa 20877279  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 13368359 - 13368399
Alignment:
Q  22 aatttggaaggagaggaacaaccgtgtctttacaaatgcgg 62  Q
    |||||||||||| ||||||||||||||||||| || |||||    
T  13368359 aatttggaaggaaaggaacaaccgtgtctttaaaagtgcgg 13368399  T

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Target: scaffold0074 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 36135 - 36044
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| |   ||| |||| |||||||||| |||||| |||||    
T  36135 ttgtaacagatattttgtgattcatcacttttagcacatcttgtgcgggatgaatgatatttcatttgggcaatatattccattttgatttg 36044  T

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Target: scaffold0074; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 36367 - 36308
Alignment:
Q  16 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctca 75  Q
    ||||||||| |||||||| || |||||||||||||| | |||| |||| |||||||||||    
T  36367 ttgggcaatatggaaggaaagaaacaaccgtgtcttaaaaaatacggtaatcgatcctca 36308  T

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Target: scaffold1251 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 922 - 861
Alignment:
Q  275 ttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 337  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||||||| |||||| ||||    
T  922 ttttagcacac-ttgtgcggggtgaatcacttttcatttgagcaatatattccattttgattt 861  T

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Target: scaffold0267 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 10968 - 11058
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||    ||||||||||||| | ||||||||||||||||||||||||| |   |||||| |||||||| |||||| |||||    
T  10968 ttgtaacagatattagaggattcatcactttaa-cacaccttgtgcggggtgaatcactctctttttgagtaatatattccattttgatttg 11058  T

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Target: scaffold0116 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 42281 - 42191
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 338  Q
    ||||||||||||||    ||||||||| |||||||||| |||||||||||||||||||| |   |||||| |||| |||||||||| |||||    
T  42281 ttgtaacagatattagaggattcatca-ttttagcacatcttgtgcggggtgaatcactttgtttttgagtaataaatttcattttgatttg 42191  T

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Target: scaffold0461 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 2192 - 2250
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcact 305  Q
    ||||||||||  ||| |||| |||||| ||||||||||||||||||||| |||||||||    
T  2192 ttgtaacagactttgggtgaatcatcaattttagcacaccttgtgcgggatgaatcact 2250  T

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Target: scaffold0461; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 9128 - 9186
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcact 305  Q
    ||||||||||  ||| |||| |||||| ||||||||||||||||||||| |||||||||    
T  9128 ttgtaacagactttgggtgaatcatcaattttagcacaccttgtgcgggatgaatcact 9186  T

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Target: scaffold0124 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 40392 - 40334
Alignment:
Q  247 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcact 305  Q
    ||||||||||  ||| |||| |||||| ||||||||||||||||||||| |||||||||    
T  40392 ttgtaacagactttgggtgaatcatcaattttagcacaccttgtgcgggatgaatcact 40334  T

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Target: scaffold0423 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 10091 - 10017
Alignment:
Q  264 tgattcatcacttttagcacaccttgtgcggggtgaatca--ctgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||| |||||||||||||||||||||||||||||  |||||  |||||| |||||||| |||||| |||||    
T  10091 tgattcatca-ttttagcacaccttgtgcggggtgaatcattctgtt-ttttgagtaatatattccattttgatttg 10017  T

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Target: scaffold0386 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 15861 - 15910
Alignment:
Q  233 ttggtgccattttcttgtaacagatattgtgtgattcatcacttttagca 282  Q
    |||||||||| | |||||||  ||||||||||||||||||||||||||||    
T  15861 ttggtgccatatccttgtaattgatattgtgtgattcatcacttttagca 15910  T

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Target: scaffold0334 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 275 - 338
Target Start/End: Original strand, 3066 - 3129
Alignment:
Q  275 ttttagcacaccttgtgcggggtgaat-cactgttcgtttgagcaatatatttcatttttatttg 338  Q
    |||||||||||||||||||| |||||| || | ||| |||||||||||||||| ||||| |||||    
T  3066 ttttagcacaccttgtgcggagtgaatgcattcttc-tttgagcaatatattttattttaatttg 3129  T

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