View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6478_low_11 (Length: 304)
Name: NF6478_low_11
Description: NF6478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6478_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 30498488 - 30498762
Alignment:
| Q |
13 |
aatatcataaataagacgagtgtcccagactagcattttgaaatacaataacacaatattaatgaagaattgtatacacacctggcttggagtttgaaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30498488 |
aatatcataaataagacgagtgtcccagactagcattttgaaatacaatagcacaatattaatgaagaattgtatacacacctggcttggagtttgaaca |
30498587 |
T |
|
| Q |
113 |
aggaatttttattggtcacattaacaagctcataatcacatttcccccttgtgtaagcaacaacggcaagtgttgggtccctttgctcacaatatttacc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30498588 |
aggaatttttattggtcacattaacaagctcataatcacatttcccccttgtgtaagcaacaacggcaagtgttgggtccctttgctcacaatatttacc |
30498687 |
T |
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| Q |
213 |
aataacacgagaatcataatataggttggttgtgagaaaatgtactggattgctattgctgtcaatgatgattct |
287 |
Q |
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| T |
30498688 |
aataacacgagaatcataatataggttggttgtgagaaaatgtactggattgctattgctgtcaatgatgattct |
30498762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 30538831 - 30539105
Alignment:
| Q |
13 |
aatatcataaataagacgagtgtcccagactagcattttgaaatacaataacacaatattaatgaagaattgtatacacacctggcttggagtttgaaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30538831 |
aatatcataaataagacgagtgtcccagactagcattttgaaatacaatagcacaatattaatgaagaattgtatacacacctggcttggagtttgaaca |
30538930 |
T |
|
| Q |
113 |
aggaatttttattggtcacattaacaagctcataatcacatttcccccttgtgtaagcaacaacggcaagtgttgggtccctttgctcacaatatttacc |
212 |
Q |
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| T |
30538931 |
aggaatttttattggtcacattaacaagctcataatcacatttcccccttgtgtaagcaacaacggcaagtgttgggtccctttgctcacaatatttacc |
30539030 |
T |
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| Q |
213 |
aataacacgagaatcataatataggttggttgtgagaaaatgtactggattgctattgctgtcaatgatgattct |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30539031 |
aataacacgagaatcataatataggttggttgtgagaaaatgtactggattgctattgctgtcaatgatgattct |
30539105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 30201270 - 30201497
Alignment:
| Q |
21 |
aaataagacgagtgtcccagactagcattttgaaatacaataacacaatattaatgaagaattgtatacacacctggcttggagtttgaacaaggaattt |
120 |
Q |
| |
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|||||| | |||||||| ||| ||||||| | ||||||||| |||| | |||| |||| |||||||||||||||| ||| || |||| ||| | |||| |
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| T |
30201270 |
aaataacatgagtgtcctagattagcattataaaatacaatgacaccttcctaattaagagttgtatacacacctggtttgtagcttgagcaacggattt |
30201369 |
T |
|
| Q |
121 |
ttattggtcacattaacaagctcataatcacatttcccccttgtgtaagcaacaacggcaagtgttgggtccctttgctcacaatatttaccaataacac |
220 |
Q |
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|||||||| || | ||||| |||||| | | || || ||||||||||| ||||| ||| ||| ||| || ||||||||||||||||| || || |
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| T |
30201370 |
ttattggtaacgt------gctcagcatcacaatgcaccatttggtaagcaacaatggcaaatgtagggccccatttctcacaatatttaccaacaatac |
30201463 |
T |
|
| Q |
221 |
gagaatcataatataggttggttgtgagaaaatg |
254 |
Q |
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|||||||||||||| |||||||| |||| ||||| |
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| T |
30201464 |
gagaatcataatattggttggttatgagtaaatg |
30201497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 281
Target Start/End: Complemental strand, 35739904 - 35739710
Alignment:
| Q |
87 |
tacacacctggcttggagtttgaacaaggaatttttattggtcacattaacaagctcataatcacatttcccccttgtgtaagcaacaacggcaagtgtt |
186 |
Q |
| |
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|||| |||| ||||| ||||||||||| ||||||||| |||| ||||| | ||| || | |||||||| || | |||||| ||||| || | ||| |
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| T |
35739904 |
tacataccttgcttgcagtttgaacaaagaatttttactggtgacattgataagttcttcatcacattgtcctcgccggtaagctacaactgccaaggtt |
35739805 |
T |
|
| Q |
187 |
gggtccctttgctcacaatatttaccaataacacgagaatcataatataggttggttgtgagaaaatgtactggattgctattgctgtcaatgat |
281 |
Q |
| |
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||||| | || ||||||||| || || | ||| ||||||||||| || |||||||||||||||||| | |||| ||| | ||||| |||||||| |
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| T |
35739804 |
gggtcgcgtttctcacaatacttgcccacaactcgagaatcatagtaagggttggttgtgagaaaattttctgggttgttgttgctatcaatgat |
35739710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 251
Target Start/End: Original strand, 29848964 - 29849133
Alignment:
| Q |
83 |
tgtatacacacctggcttggagtttgaacaaggaatttttattggtcacattaacaagctcataatcacatttcccccttgtgtaagcaacaacggcaag |
182 |
Q |
| |
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||||| ||||||| ||||| || |||||||| || || |||||| | |||||||||||||| |||||||| | |||| ||||||||||| ||||| |
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| T |
29848964 |
tgtattcacacctagcttgtagcttgaacaaagagttgttattgctaacattaacaagctcggcatcacattgcatcctttggtaagcaacaatggcaaa |
29849063 |
T |
|
| Q |
183 |
tgttgggtccctttgctcacaatattt-accaataacacgagaatcataatataggttggttgtgagaaa |
251 |
Q |
| |
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| || ||| | ||||| |||||| ||||| || |||||||||||||||||||| | |||||||||| |
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| T |
29849064 |
tacatggacccaattctcacgatattttaccaacaaaacgagaatcataatataggtggcttgtgagaaa |
29849133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 29868765 - 29868818
Alignment:
| Q |
198 |
ctcacaatatttaccaataacacgagaatcataatataggttggttgtgagaaa |
251 |
Q |
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||||| ||||||||||| | ||||||||||||||||||||| | |||||||||| |
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| T |
29868765 |
ctcacgatatttaccaacaccacgagaatcataatataggtggcttgtgagaaa |
29868818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 92 - 285
Target Start/End: Complemental strand, 26030435 - 26030242
Alignment:
| Q |
92 |
acctggcttggagtttgaacaaggaatttttattggtcacattaacaagctcataatcacatttcccccttgtgtaagcaacaacggcaagtgttgggtc |
191 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||| ||| |||||||||||| ||||| || || || |
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| T |
26030435 |
acctcgcttggagtttgaacaaggaatttttattggtaacattaacaagctcatcatcacattgccctcttcggtaagcaacaacagcaagagtaggatc |
26030336 |
T |
|
| Q |
192 |
cctttgctcacaatatttaccaataacacgagaatcataatataggttggttgtgagaaaatgtactggattgctattgctgtcaatgatgatt |
285 |
Q |
| |
|
| || ||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |||||| | |||||| | |||||||||||||||||| |
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| T |
26030335 |
tcgtttctcacaatacttaccaacaacacgagaatcataatatgggttggttgtgaggaaatgttcaggattgttgttgctgtcaatgatgatt |
26030242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 31847682 - 31847596
Alignment:
| Q |
199 |
tcacaatatttaccaataacacgagaatcataatataggttggttgtgagaaaatgtactggattgctattgctgtcaatgatgatt |
285 |
Q |
| |
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||||||||||| || | ||| ||||||||||| ||| |||| || |||||||||||| |||| ||| | || || |||||||||||| |
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| T |
31847682 |
tcacaatatttgcccacaactcgagaatcatagtatgggtttgtagtgagaaaatgttctgggttgttgttactatcaatgatgatt |
31847596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 281
Target Start/End: Complemental strand, 20302076 - 20301997
Alignment:
| Q |
201 |
acaatatttaccaataacacgagaatcataatataggttggttgtgagaaaatgtactggattgctattgctgtcaatgat |
281 |
Q |
| |
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|||||||||||||| || |||||||||||||||| |||||||||| |||||| || ||||| ||||| |||| ||||| |
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| T |
20302076 |
acaatatttaccaacaa-acgagaatcataatatgcattggttgtgacaaaatgctctagattgttattgatgtcgatgat |
20301997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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