View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6478_low_12 (Length: 289)
Name: NF6478_low_12
Description: NF6478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6478_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 8361866 - 8361592
Alignment:
| Q |
1 |
gttttgaaaatgtaatttggtgttcaacactcgcttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgtttgtttgaaacaatg |
100 |
Q |
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| T |
8361866 |
gttttgaaaatgtaatttgatgtgcaacacttgtttggttgatatgcattgcagata---tgggtggaaattgctcaccaggtgtttttttgaaacaatg |
8361770 |
T |
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| Q |
101 |
tcttagagagagaga----tgtgaattgaataatcannnnnnn-cctgtttgaatttttggcataatatatcagctctgaacctattttgatttaattgt |
195 |
Q |
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| T |
8361769 |
tcttagagagagagagaaatgtgaattgaataatcattttttttcctgtttgaatttttggcataatatatctgctctgaacctattttgattcaatttt |
8361670 |
T |
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| Q |
196 |
catgaaggctgaaacaatcactgtttttattgtcattttatagctagggataaggcttagtctaggagtatatatata |
273 |
Q |
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| T |
8361669 |
cattatggctaaaacaatcactgattttattgtcatttcatagctagggataaggcttagtctaggagtatatatata |
8361592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 8411604 - 8411440
Alignment:
| Q |
1 |
gttttgaaaatgtaatttggtgttcaacactcgcttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgtttgtttgaaacaatg |
100 |
Q |
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| T |
8411604 |
gttttgaaaatgtaatttggtgttcaacactcccttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgtttgtttgaaacaatg |
8411505 |
T |
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| Q |
101 |
tcttagagaga--gagatgtgaattgaataatcannnnnnncctgtttgaatttttggcataata |
163 |
Q |
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| T |
8411504 |
tcttagagagagagagatgtgaattgaataatcatgtttttcctgtttgaatttttggcataata |
8411440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 8415197 - 8415057
Alignment:
| Q |
80 |
aggtgtttgtttgaaacaatgtcttagagagagagatgtgaattgaataatcannnnnnncctgtttgaatttttggc---ataatatatcagctctgaa |
176 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||| ||||||| ||||||||||||| |||| |||||||||| |||||||| |
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| T |
8415197 |
aggtgtttgtttgaaacaatgtcttaaagagagagatatgaattgcataatcatgtttttcctgtttgaatttatggcataataatatatctgctctgaa |
8415098 |
T |
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| Q |
177 |
cctattttgatttaattgtcatgaaggctgaaacaatcact |
217 |
Q |
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| T |
8415097 |
cctatttagattcgattttcatgatggctgaaacaatcact |
8415057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 8350306 - 8350224
Alignment:
| Q |
149 |
atttttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcat |
231 |
Q |
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| T |
8350306 |
atttatggcataatagatctgctctgaacctatttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcat |
8350224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 8480807 - 8480889
Alignment:
| Q |
149 |
atttttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcat |
231 |
Q |
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| T |
8480807 |
atttatggcataataaatctactctgaacctgtttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcat |
8480889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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