View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6478_low_14 (Length: 251)

Name: NF6478_low_14
Description: NF6478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6478_low_14
NF6478_low_14
[»] chr5 (13 HSPs)
chr5 (57-246)||(7207513-7207702)
chr5 (2-55)||(6335392-6335445)
chr5 (2-55)||(16602714-16602767)
chr5 (2-55)||(19238796-19238849)
chr5 (2-55)||(34064960-34065013)
chr5 (2-55)||(36409908-36409961)
chr5 (2-55)||(2011409-2011462)
chr5 (2-55)||(12336216-12336269)
chr5 (2-57)||(9499228-9499283)
chr5 (21-55)||(6114144-6114178)
chr5 (2-55)||(18480070-18480123)
chr5 (12-57)||(21605648-21605693)
chr5 (2-58)||(29666169-29666225)
[»] chr2 (14 HSPs)
chr2 (2-66)||(41184478-41184542)
chr2 (2-55)||(4108309-4108362)
chr2 (2-54)||(36428858-36428910)
chr2 (2-58)||(16718635-16718691)
chr2 (5-55)||(15355275-15355325)
chr2 (1-55)||(43359106-43359160)
chr2 (2-55)||(33429135-33429188)
chr2 (12-60)||(4673963-4674011)
chr2 (2-54)||(28318392-28318444)
chr2 (12-57)||(5389562-5389607)
chr2 (12-57)||(6884159-6884204)
chr2 (2-55)||(7069196-7069249)
chr2 (22-55)||(38073477-38073510)
chr2 (22-62)||(15176337-15176377)
[»] chr8 (23 HSPs)
chr8 (2-55)||(17096632-17096685)
chr8 (1-66)||(44637270-44637335)
chr8 (1-67)||(36569999-36570066)
chr8 (2-55)||(17069585-17069638)
chr8 (2-55)||(17578635-17578688)
chr8 (2-55)||(40154491-40154544)
chr8 (2-62)||(2880280-2880340)
chr8 (12-62)||(19718712-19718762)
chr8 (2-55)||(34058181-34058234)
chr8 (12-61)||(36002352-36002401)
chr8 (2-55)||(41674486-41674539)
chr8 (2-55)||(43331746-43331799)
chr8 (2-55)||(44309568-44309621)
chr8 (5-60)||(11360514-11360569)
chr8 (12-55)||(12633267-12633310)
chr8 (12-55)||(30777635-30777678)
chr8 (2-53)||(40972416-40972467)
chr8 (12-62)||(15726251-15726301)
chr8 (22-55)||(2666507-2666540)
chr8 (22-55)||(27847460-27847493)
chr8 (2-55)||(40824466-40824519)
chr8 (12-60)||(417676-417724)
chr8 (10-57)||(1043058-1043106)
[»] chr3 (15 HSPs)
chr3 (2-55)||(24397376-24397429)
chr3 (2-55)||(28146666-28146719)
chr3 (2-60)||(36790238-36790296)
chr3 (2-55)||(4521620-4521673)
chr3 (2-55)||(44568585-44568638)
chr3 (2-55)||(47175469-47175522)
chr3 (22-57)||(39540671-39540706)
chr3 (12-55)||(39630252-39630295)
chr3 (9-55)||(19547491-19547537)
chr3 (14-55)||(51996781-51996822)
chr3 (12-55)||(15804260-15804303)
chr3 (2-55)||(20199349-20199402)
chr3 (2-55)||(26001197-26001250)
chr3 (16-68)||(29384673-29384725)
chr3 (12-60)||(42067576-42067624)
[»] chr1 (23 HSPs)
chr1 (2-55)||(50534235-50534288)
chr1 (2-55)||(5360553-5360606)
chr1 (2-55)||(39085065-39085118)
chr1 (12-55)||(12227123-12227166)
chr1 (1-55)||(41568447-41568501)
chr1 (1-55)||(43536879-43536933)
chr1 (1-55)||(46281944-46281998)
chr1 (1-54)||(13216446-13216499)
chr1 (2-55)||(33081990-33082043)
chr1 (2-55)||(35912983-35913036)
chr1 (2-55)||(40868487-40868540)
chr1 (22-55)||(51873645-51873678)
chr1 (2-54)||(47458528-47458580)
chr1 (12-55)||(14077331-14077374)
chr1 (5-55)||(24230924-24230975)
chr1 (2-53)||(24677903-24677954)
chr1 (21-60)||(31931068-31931107)
chr1 (12-55)||(34256455-34256498)
chr1 (12-55)||(37498746-37498789)
chr1 (12-55)||(49982817-49982860)
chr1 (1-55)||(35534222-35534276)
chr1 (2-55)||(5957609-5957662)
chr1 (22-54)||(43146422-43146454)
[»] chr7 (15 HSPs)
chr7 (2-58)||(24148797-24148853)
chr7 (2-55)||(11640297-11640350)
chr7 (2-55)||(25411977-25412030)
chr7 (2-55)||(26004165-26004218)
chr7 (2-53)||(49079257-49079308)
chr7 (1-55)||(22904842-22904896)
chr7 (2-60)||(27897572-27897630)
chr7 (2-55)||(2932931-2932984)
chr7 (2-55)||(3228243-3228296)
chr7 (2-61)||(40331409-40331468)
chr7 (13-55)||(22639730-22639772)
chr7 (2-55)||(12395196-12395249)
chr7 (2-55)||(27427471-27427524)
chr7 (2-55)||(41311056-41311109)
chr7 (12-60)||(41913455-41913503)
[»] chr4 (22 HSPs)
chr4 (2-57)||(52414970-52415025)
chr4 (2-55)||(17370627-17370680)
chr4 (2-55)||(25684445-25684498)
chr4 (2-55)||(48207080-48207133)
chr4 (12-55)||(6807355-6807398)
chr4 (12-54)||(39412534-39412576)
chr4 (12-55)||(3690512-3690555)
chr4 (2-57)||(6882884-6882939)
chr4 (12-55)||(19842440-19842483)
chr4 (22-57)||(32570368-32570403)
chr4 (12-55)||(41760022-41760065)
chr4 (12-58)||(52589070-52589116)
chr4 (12-66)||(52809305-52809359)
chr4 (13-55)||(53389209-53389251)
chr4 (2-55)||(1792178-1792231)
chr4 (2-55)||(5474361-5474414)
chr4 (13-57)||(26117746-26117791)
chr4 (22-55)||(52940482-52940515)
chr4 (23-55)||(337507-337539)
chr4 (22-62)||(37992053-37992093)
chr4 (2-54)||(48262565-48262617)
chr4 (13-68)||(50732850-50732906)
[»] chr6 (8 HSPs)
chr6 (1-62)||(14872676-14872737)
chr6 (12-55)||(3954268-3954311)
chr6 (13-55)||(11273779-11273821)
chr6 (2-60)||(14501023-14501081)
chr6 (13-54)||(22084826-22084867)
chr6 (22-57)||(926540-926575)
chr6 (12-59)||(4979448-4979496)
chr6 (12-56)||(17545606-17545650)
[»] scaffold0325 (1 HSPs)
scaffold0325 (22-58)||(1584-1620)
[»] scaffold0067 (1 HSPs)
scaffold0067 (2-54)||(41391-41443)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 57 - 246
Target Start/End: Original strand, 7207513 - 7207702
Alignment:
Q  57 ctaaaattaatctcttttgagattattctacaatatatattggaaatattgcatgatgatcaattaaatattgaaaatacagacaagaaagatatagaag 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  7207513 ctaaaattaatctcttttgagattattctacaatatatattggaaatattgcataatgatcaattaaatattgaaaatacagacaagaaaaatatagaag 7207612  T
Q  157 ccaagatgcggcgactagccactgaagttaacttaacgttaacattagcagagnnnnnnncaatgttttgtccccacaccctatgctact 246  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||| ||||    
T  7207613 ccaagatgcggcgactagccagtgaagttaacttaacgttaacattagcagagaaaaaaacaatgttttgtccccacaccccatgatact 7207702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 6335445 - 6335392
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||    
T  6335445 tttaatgtttggtgtaccggtacactcaaaatgttgggtgtaccatagaatttg 6335392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 16602714 - 16602767
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||    
T  16602714 tttaatgtttggtgtaccggtacactcaaaatgttgggtgtaccatagaatttg 16602767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 19238849 - 19238796
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||    
T  19238849 tttaatgtttggtgtaccggtacactcaaaatgttgggtgtaccatagaatttg 19238796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 34065013 - 34064960
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||    
T  34065013 tttaatgtttggtgtaccggtacactcaaaatgttggatgtaccataaaatttg 34064960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 36409961 - 36409908
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||||    
T  36409961 tttaatgtttggtgtaccgatacactcaaaatgttgggtgtaccataaaatttg 36409908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 2011409 - 2011462
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||  ||||||||||||||||    
T  2011409 tttaatgtttggtgtaccggtacactcaaaatgttgagtgtaccatagaatttg 2011462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 12336269 - 12336216
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||| | ||||||||||||||    
T  12336269 tttaatgtttggtgtaccggtacactcaaaatgttgggtataccatagaatttg 12336216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 9499283 - 9499228
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtc 57  Q
    ||||||||| ||| ||| | ||||||||||||||||  ||||||||||||||||||    
T  9499283 tttaatgtttggtataccggtacactcaaaatgttgagtgtaccatagaatttgtc 9499228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 6114144 - 6114178
Alignment:
Q  21 atacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||||| |||||||||||||||||||||||    
T  6114144 atacactcaaattgttggatgtaccatagaatttg 6114178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 18480123 - 18480070
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | |||||||||||| |||| | ||||||||||||||    
T  18480123 tttaatgtttggtgtaccggtacactcaaaatattgggtataccatagaatttg 18480070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 21605693 - 21605648
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttgtc 57  Q
    |||||||  ||||||||||| |||||| ||||||||||||||||||    
T  21605693 ggtgtaccaatacactcaaattgttgggtgtaccatagaatttgtc 21605648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 29666169 - 29666225
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtct 58  Q
    ||||||||| ||||||| | |||||||||||| | |  |||||||||||||||||||    
T  29666169 tttaatgtttggtgtaccggtacactcaaaatatcgagtgtaccatagaatttgtct 29666225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 41184542 - 41184478
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaaaattaa 66  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||||||||| ||| |||||||    
T  41184542 tttaatgtttggtgtaccggtacactcaaaatgttggatgtaccatagaatttatcttaaattaa 41184478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 4108362 - 4108309
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||    
T  4108362 tttaatgtttggtgtaccggtacactcaaaatgttggatgtaccatagaatttg 4108309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 36428858 - 36428910
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaattt 54  Q
    ||||||||| ||||||| | |||||||||||||||||||||||||||||||||    
T  36428858 tttaatgtttggtgtaccggtacactcaaaatgttggatgtaccatagaattt 36428910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 16718691 - 16718635
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtct 58  Q
    ||||||||| ||||||| | |||||||||||| ||| ||||||||||||||||||||    
T  16718691 tttaatgtttggtgtaccggtacactcaaaatattgaatgtaccatagaatttgtct 16718635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 15355275 - 15355325
Alignment:
Q  5 aatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||| ||| ||||| ||||||||||||||||||||||||||| ||||||    
T  15355275 aatgtttggtatactggtacactcaaaatgttggatgtaccatataatttg 15355325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 43359160 - 43359106
Alignment:
Q  1 ttttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||||||| | ||||| | |||||||||||| |||||||||||||||||||||    
T  43359160 ttttaatgtttgatgtaccggtacactcaaaatattggatgtaccatagaatttg 43359106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 33429188 - 33429135
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||  ||||||||||||||||    
T  33429188 tttaatgtttggtgtaccggtacactcaaaatgttgagtgtaccatagaatttg 33429135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 4673963 - 4674011
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaa 60  Q
    |||||||  ||||||||||| ||||||||||||||||||||||| ||||    
T  4673963 ggtgtaccaatacactcaaattgttggatgtaccatagaatttgcctaa 4674011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 28318392 - 28318444
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaattt 54  Q
    ||||||||| ||||||| | |||||||||||| || |||||||||||||||||    
T  28318392 tttaatgtttggtgtaccggtacactcaaaatattagatgtaccatagaattt 28318444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 5389562 - 5389607
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttgtc 57  Q
    |||||||  ||||||||||| || ||||||||||||||||||||||    
T  5389562 ggtgtaccaatacactcaaattggtggatgtaccatagaatttgtc 5389607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 6884204 - 6884159
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttgtc 57  Q
    |||||||  ||||||||||| |||||| ||||||||||||||||||    
T  6884204 ggtgtaccaatacactcaaattgttgggtgtaccatagaatttgtc 6884159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 7069249 - 7069196
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| |||||||   ||||||||||||||||| ||||||||| ||||||    
T  7069249 tttaatgtttggtgtacccgtacactcaaaatgttgggtgtaccataaaatttg 7069196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 38073477 - 38073510
Alignment:
Q  22 tacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||||||||| |||||||||||||||||||||    
T  38073477 tacactcaaaattttggatgtaccatagaatttg 38073510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 15176377 - 15176337
Alignment:
Q  22 tacactcaaaatgttggatgtaccatagaatttgtctaaaa 62  Q
    |||||||||||| |||| |||||||||||||||| ||||||    
T  15176377 tacactcaaaatattgggtgtaccatagaatttgcctaaaa 15176337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 17096632 - 17096685
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||    
T  17096632 tttaatgtttggtgtaccgatacactcaaaatgttgggtgtaccatagaatttg 17096685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 44637270 - 44637335
Alignment:
Q  1 ttttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaaaattaa 66  Q
    |||||||||| ||| ||| | |||||| ||||||||||||||||||||||||||||||| ||||||    
T  44637270 ttttaatgtttggtataccggtacacttaaaatgttggatgtaccatagaatttgtctataattaa 44637335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 36569999 - 36570066
Alignment:
Q  1 ttttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtc-taaaattaat 67  Q
    |||||||||| ||||||||| |||||| |||||||||| |||||||||||||||| | ||||||||||    
T  36569999 ttttaatgtttggtgtactggtacacttaaaatgttgggtgtaccatagaatttgccttaaaattaat 36570066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 17069585 - 17069638
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||    
T  17069585 tttaatgtttggtgtaccgatacactcaaaatggtgggtgtaccatagaatttg 17069638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 17578688 - 17578635
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||    
T  17578688 tttaatgtttggtgtaccgatacactcaaaatggtgggtgtaccatagaatttg 17578635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 40154544 - 40154491
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||||    
T  40154544 tttaatgtttggtgtaccgatacactcaaaatgttgggtgtaccataaaatttg 40154491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 2880280 - 2880340
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaaaa 62  Q
    ||||||||| ||||||| | ||||||||||||||||  |||||||||||||||| ||||||    
T  2880280 tttaatgtttggtgtaccggtacactcaaaatgttgagtgtaccatagaatttgcctaaaa 2880340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 19718712 - 19718762
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaaaa 62  Q
    |||||||| ||||||||||| | ||||||||||||||||||||| ||||||    
T  19718712 ggtgtactaatacactcaaatttttggatgtaccatagaatttgcctaaaa 19718762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 34058181 - 34058234
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| |||||||   |||||||| |||||||||||||||||||||||||    
T  34058181 tttaatgtttggtgtacaagtacactcagaatgttggatgtaccatagaatttg 34058234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 36002401 - 36002352
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaaa 61  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||| |||||    
T  36002401 ggtgtactaatacactcaaattgttggatgtaccatagaacttgcctaaa 36002352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 41674539 - 41674486
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||  ||||||||||||||||    
T  41674539 tttaatgtttggtgtaccggtacactcaaaatgttgagtgtaccatagaatttg 41674486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 43331799 - 43331746
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||| ||| ||||||| | ||||||||||||||||| ||||||||||||||||    
T  43331799 tttaaagtttggtgtaccggtacactcaaaatgttgggtgtaccatagaatttg 43331746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 44309621 - 44309568
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||| ||| ||||||| | ||||||||||||||||| ||||||||||||||||    
T  44309621 tttaaagtttggtgtaccggtacactcaaaatgttgggtgtaccatagaatttg 44309568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 11360514 - 11360569
Alignment:
Q  5 aatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaa 60  Q
    |||||| ||||||| | || ||||||||||||| ||||||||||||||||| ||||    
T  11360514 aatgtttggtgtaccggtatactcaaaatgttgaatgtaccatagaatttgcctaa 11360569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 12633267 - 12633310
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||| || ||||||||||||||||| ||||||||||||||||    
T  12633267 ggtgtaatggtacactcaaaatgttgggtgtaccatagaatttg 12633310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 30777635 - 30777678
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||| | |||||||||||||||| |||||||||||||||||    
T  30777635 ggtgtaccggtacactcaaaatgttgaatgtaccatagaatttg 30777678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 40972416 - 40972467
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatt 53  Q
    ||||||||| ||||||| | |||||||||||| ||| |||||||||||||||    
T  40972416 tttaatgtttggtgtaccggtacactcaaaatattgaatgtaccatagaatt 40972467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 15726251 - 15726301
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaaaa 62  Q
    |||||||  ||||||||||| | ||||||||||||||||||||| ||||||    
T  15726251 ggtgtaccaatacactcaaattattggatgtaccatagaatttgcctaaaa 15726301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 2666540 - 2666507
Alignment:
Q  22 tacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||||||||| ||||||||||||||||||    
T  2666540 tacactcaaaatgttagatgtaccatagaatttg 2666507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 27847493 - 27847460
Alignment:
Q  22 tacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||||||||| |||||||||||||||||||||    
T  27847493 tacactcaaaatattggatgtaccatagaatttg 27847460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 40824519 - 40824466
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||| || ||||||| | |||||||||||| |||||| ||||||||||||||    
T  40824519 tttaatatttggtgtaccggtacactcaaaatattggatttaccatagaatttg 40824466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 417724 - 417676
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaa 60  Q
    ||||||||| |||||||||||| |||  |||||||||||||||| ||||    
T  417724 ggtgtactggtacactcaaaatattgagtgtaccatagaatttgcctaa 417676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 1043106 - 1043058
Alignment:
Q  10 tgggtgtactgatacactcaaa-atgttggatgtaccatagaatttgtc 57  Q
    ||||||||| |||||||||||| || |||| ||||||||||||||||||    
T  1043106 tgggtgtaccgatacactcaaatatattgggtgtaccatagaatttgtc 1043058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 24397429 - 24397376
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||    
T  24397429 tttaatgtttggtgtaccggtacactcaaaatgttggatgtaccatagaatttg 24397376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 28146666 - 28146719
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||| || ||||||||| ||||||||||||||||||||||||||||||||||    
T  28146666 tttaatatttggtgtactggtacactcaaaatgttggatgtaccatagaatttg 28146719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 36790238 - 36790296
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaa 60  Q
    ||||||||| ||||||| ||||||||||||||||||  |||||||||||||||| ||||    
T  36790238 tttaatgtttggtgtaccgatacactcaaaatgttgagtgtaccatagaatttgcctaa 36790296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 4521620 - 4521673
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||    
T  4521620 tttaatgtttggtgtaccggtacactcaaaatgttgggtgtaccatagaatttg 4521673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 44568638 - 44568585
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||    
T  44568638 tttaatgtttggtgtaccgatacactcaaaatgttaggtgtaccatagaatttg 44568585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 47175522 - 47175469
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||    
T  47175522 tttaatgtttggtgtaccggtacactcaaaatgttgggtgtaccatagaatttg 47175469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 39540706 - 39540671
Alignment:
Q  22 tacactcaaaatgttggatgtaccatagaatttgtc 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  39540706 tacactcaaaatgttggatgtaccatagaatttgtc 39540671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 39630252 - 39630295
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||||| ||||||||||| |||||||||||||||||||||||    
T  39630252 ggtgtactaatacactcaaattgttggatgtaccatagaatttg 39630295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 19547537 - 19547491
Alignment:
Q  9 ttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||||||| |||||||||||| | |||||||||||||||||||||    
T  19547537 ttgggtgtaccgatacactcaaatttttggatgtaccatagaatttg 19547491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 51996781 - 51996822
Alignment:
Q  14 tgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||| ||||||||||||||||| ||||||||||||||||    
T  51996781 tgtactggtacactcaaaatgttgggtgtaccatagaatttg 51996822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 15804303 - 15804260
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||| || ||||||||||||||||| ||||||||||||||||    
T  15804303 ggtgtaatggtacactcaaaatgttgggtgtaccatagaatttg 15804260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 20199402 - 20199349
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | |||||||| |||||||  ||||||||||||||||    
T  20199402 tttaatgtttggtgtaccggtacactcacaatgttgagtgtaccatagaatttg 20199349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 26001250 - 26001197
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | |||||||||||| |||  ||||||||||||||||    
T  26001250 tttaatgtttggtgtaccggtacactcaaaatattgagtgtaccatagaatttg 26001197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 29384725 - 29384673
Alignment:
Q  16 tactgatacactcaaaatgttggatgtaccatagaatttgtctaaaattaatc 68  Q
    ||||| |||||||| |||||||| |||||||||||||||| | |||| |||||    
T  29384725 tactggtacactcacaatgttgggtgtaccatagaatttgcccaaaaataatc 29384673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 42067624 - 42067576
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaa 60  Q
    |||||||  ||||||||||| |||||| |||||||||||||||| ||||    
T  42067624 ggtgtaccaatacactcaaattgttgggtgtaccatagaatttgcctaa 42067576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 50534235 - 50534288
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||    
T  50534235 tttaatgtttggtgtaccggtacactcaaaatgttggatgtaccatagaatttg 50534288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 5360553 - 5360606
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||    
T  5360553 tttaatgtttggtgtaccggtacactcaaaatgttgggtgtaccatagaatttg 5360606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 39085065 - 39085118
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | |||||||||||||||| |||||||||||||||||    
T  39085065 tttaatgtttggtgtaccggtacactcaaaatgttgaatgtaccatagaatttg 39085118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 12227166 - 12227123
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||    
T  12227166 ggtgtactggtacactcaaaatgttgggtgtaccatagaatttg 12227123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41568501 - 41568447
Alignment:
Q  1 ttttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||||||| ||||||| | |||||||||||| |||| ||||||||||||||||    
T  41568501 ttttaatgtttggtgtaccggtacactcaaaatattgggtgtaccatagaatttg 41568447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 43536933 - 43536879
Alignment:
Q  1 ttttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||||||| ||||||| | ||||||||||||||||| ||||||||| ||||||    
T  43536933 ttttaatgtttggtgtaccggtacactcaaaatgttgggtgtaccatataatttg 43536879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 46281998 - 46281944
Alignment:
Q  1 ttttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||||||| ||||||| | |||||||||||| |||| ||||||||||||||||    
T  46281998 ttttaatgtttggtgtaccggtacactcaaaatattgggtgtaccatagaatttg 46281944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13216446 - 13216499
Alignment:
Q  1 ttttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaattt 54  Q
    |||||||||| ||||||| | ||||||||||||||| | |||||||||||||||    
T  13216446 ttttaatgtttggtgtaccggtacactcaaaatgttaggtgtaccatagaattt 13216499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 33082043 - 33081990
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||| || ||||||| | ||||||||||||||||| ||||||||||||||||    
T  33082043 tttaatatttggtgtaccggtacactcaaaatgttgggtgtaccatagaatttg 33081990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 35912983 - 35913036
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| | ||||| | ||||||||||||||||| ||||||||||||||||    
T  35912983 tttaatgttcgatgtaccggtacactcaaaatgttgggtgtaccatagaatttg 35913036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 40868487 - 40868540
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||| || ||||||| | |||||||||||||||| |||||||||||||||||    
T  40868487 tttaatttttggtgtaccggtacactcaaaatgttgaatgtaccatagaatttg 40868540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 51873645 - 51873678
Alignment:
Q  22 tacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||||||||||||||||||||||||||||    
T  51873645 tacactcaaaatgttggatgtaccatagaatttg 51873678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 47458580 - 47458528
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaattt 54  Q
    ||||||||| ||||||| | |||||||||||| ||||||||| ||||||||||    
T  47458580 tttaatgtttggtgtaccggtacactcaaaatattggatgtatcatagaattt 47458528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 14077374 - 14077331
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||| | |||||||||||||||||||||||| |||||||||    
T  14077374 ggtgtaccggtacactcaaaatgttggatgtaccgtagaatttg 14077331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 24230924 - 24230975
Alignment:
Q  5 aatgttgggtgtactgatacactcaaa-atgttggatgtaccatagaatttg 55  Q
    |||| ||||||||| |||||||||||| || |||||||||||||||||||||    
T  24230924 aatggtgggtgtaccgatacactcaaatatattggatgtaccatagaatttg 24230975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 24677903 - 24677954
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatt 53  Q
    ||||||||| ||||| | | ||||||||||||||||| ||||||||||||||    
T  24677903 tttaatgtttggtgtgccggtacactcaaaatgttgggtgtaccatagaatt 24677954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 31931068 - 31931107
Alignment:
Q  21 atacactcaaaatgttggatgtaccatagaatttgtctaa 60  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  31931068 atacactcaaattgttggatgtaccatagaatttgcctaa 31931107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 34256498 - 34256455
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||    
T  34256498 ggtgtaccgatacactcaaattgttgggtgtaccatagaatttg 34256455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 37498789 - 37498746
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||||  ||||||||||| |||||||||||||||||||||||    
T  37498789 ggtgtaccaatacactcaaattgttggatgtaccatagaatttg 37498746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 49982817 - 49982860
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||||||||||||||||||||| | ||||||| ||||||    
T  49982817 ggtgtactgatacactcaaaatgttgggtataccataaaatttg 49982860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 35534222 - 35534276
Alignment:
Q  1 ttttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||||  |||||| | |||||||||||| |||| ||||||||||||||||    
T  35534222 ttttaatgtttagtgtaccggtacactcaaaatattgggtgtaccatagaatttg 35534276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 5957609 - 5957662
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||| ||  ||| |||||||||||||||||| |||||||||||    
T  5957609 tttaatgtttggtgttctagtacgctcaaaatgttggatgtatcatagaatttg 5957662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 43146454 - 43146422
Alignment:
Q  22 tacactcaaaatgttggatgtaccatagaattt 54  Q
    |||||||||| ||||||||||||||||||||||    
T  43146454 tacactcaaattgttggatgtaccatagaattt 43146422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 24148853 - 24148797
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtct 58  Q
    ||||||||| ||||||||| |||||||||||| || |||||||||||||||||||||    
T  24148853 tttaatgtttggtgtactggtacactcaaaatattagatgtaccatagaatttgtct 24148797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 11640350 - 11640297
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||    
T  11640350 tttaatgtttggtgtaccggtacactcaaaatgttgggtgtaccatagaatttg 11640297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 25411977 - 25412030
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||    
T  25411977 tttaatgtttggtgtaccggtacactcaaaatgttggatgtaccatacaatttg 25412030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 26004218 - 26004165
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | |||||| |||||||||||||||||||||||||||    
T  26004218 tttaatgtttggtgtaccggtacacttaaaatgttggatgtaccatagaatttg 26004165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 49079308 - 49079257
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatt 53  Q
    ||||||||| ||||||| | ||||||||||||||||| ||||||||||||||    
T  49079308 tttaatgtttggtgtaccggtacactcaaaatgttgggtgtaccatagaatt 49079257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 22904842 - 22904896
Alignment:
Q  1 ttttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||||||||| ||||| | ||||||||||||||||| ||||||||| ||||||    
T  22904842 ttttaatgttggatgtaccggtacactcaaaatgttgggtgtaccataaaatttg 22904896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 27897572 - 27897630
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaa 60  Q
    ||||||||| ||||||| | ||||||||||||||| | |||||||||||||||| ||||    
T  27897572 tttaatgtttggtgtaccggtacactcaaaatgttaggtgtaccatagaatttgcctaa 27897630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 2932931 - 2932984
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||| ||||||||||| ||||    
T  2932931 tttaatgtttggtgtaccggtacactcaaaatgttgggtgtaccatagagtttg 2932984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 3228296 - 3228243
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||  | |||||| |||||||||||||||||||||||||||    
T  3228296 tttaatgtttggtgtatcggtacacttaaaatgttggatgtaccatagaatttg 3228243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 40331409 - 40331468
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaaa 61  Q
    ||||||||| ||||||| | ||||||||||||||||  ||||||||| |||||| |||||    
T  40331409 tttaatgtttggtgtaccggtacactcaaaatgttgagtgtaccatataatttgcctaaa 40331468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 22639730 - 22639772
Alignment:
Q  13 gtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||| |||||||||||||||||||||||| | |||||||||    
T  22639730 gtgtaccgatacactcaaaatgttggatgtatcgtagaatttg 22639772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 12395249 - 12395196
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||| ||| ||||||| | ||||||||||||||||| ||||||||| ||||||    
T  12395249 tttaacgtttggtgtaccggtacactcaaaatgttgggtgtaccataaaatttg 12395196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 27427471 - 27427524
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||  |||| ||||||||| |||||||||||||| ||||||    
T  27427471 tttaatgtttggtgtatcgatatactcaaaatattggatgtaccataaaatttg 27427524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 41311109 - 41311056
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||| || ||||||| | ||||||||||||||||  ||||||||||||||||    
T  41311109 tttaatatttggtgtaccggtacactcaaaatgttgagtgtaccatagaatttg 41311056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 41913455 - 41913503
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaa 60  Q
    |||||||  ||||||||||| |||||||||||||||| |||||| ||||    
T  41913455 ggtgtaccaatacactcaaattgttggatgtaccatataatttgcctaa 41913503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 52415025 - 52414970
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtc 57  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||    
T  52415025 tttaatgtttggtgtaccgatacacttaaaatgttggatgtaccgtagaatttgtc 52414970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 17370627 - 17370680
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||    
T  17370627 tttaatgtttggtgtaccggtacactcaaaatgttgggtgtaccatagaatttg 17370680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 25684445 - 25684498
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | |||||||||||||||||||||| |||||||||||    
T  25684445 tttaatgtttggtgtaccggtacactcaaaatgttggatgtatcatagaatttg 25684498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 48207133 - 48207080
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||    
T  48207133 tttaatgtttggtgtaccggtacactcaaaatgttgggtgtaccatagaatttg 48207080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 6807355 - 6807398
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||||||||||| |||||||||||| ||||||||||||||||    
T  6807355 ggtgtactgatacattcaaaatgttgggtgtaccatagaatttg 6807398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 39412534 - 39412576
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaattt 54  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  39412534 ggtgtactggtacactcaaaatgttggatataccatagaattt 39412576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 3690555 - 3690512
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||    
T  3690555 ggtgtaccgatacactcaaaatgttgagtgtaccatagaatttg 3690512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 6882884 - 6882939
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtc 57  Q
    ||||||||| ||||||| | || ||| |||||||||| ||||||||||||||||||    
T  6882884 tttaatgtttggtgtaccggtatacttaaaatgttgggtgtaccatagaatttgtc 6882939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 19842483 - 19842440
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| |||||||||| | |||||||||||||||||||||    
T  19842483 ggtgtactggtacactcaaatttttggatgtaccatagaatttg 19842440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 32570403 - 32570368
Alignment:
Q  22 tacactcaaaatgttggatgtaccatagaatttgtc 57  Q
    |||||||||||| |||||||||||||||||||||||    
T  32570403 tacactcaaaattttggatgtaccatagaatttgtc 32570368  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 41760022 - 41760065
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||||  ||||||||||| |||||||||||||||||||||||    
T  41760022 ggtgtaccaatacactcaaattgttggatgtaccatagaatttg 41760065  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 52589116 - 52589070
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttgtct 58  Q
    |||||||  ||||||||||| ||||||||||||||||||| ||||||    
T  52589116 ggtgtaccaatacactcaaattgttggatgtaccatagaacttgtct 52589070  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 52809305 - 52809359
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaaaattaa 66  Q
    |||||||  ||||||||||| ||||||||||||||||| ||||| ||| ||||||    
T  52809305 ggtgtaccaatacactcaaattgttggatgtaccatagtatttgcctacaattaa 52809359  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 53389209 - 53389251
Alignment:
Q  13 gtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||| |||||||||||| |||| ||||||||||||||||||    
T  53389209 gtgtaccgatacactcaaattgtttgatgtaccatagaatttg 53389251  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 1792178 - 1792231
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||| | |||||||||||| |||  ||||||||||||||||    
T  1792178 tttaatgtttggtgtaccggtacactcaaaatattgagtgtaccatagaatttg 1792231  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 5474361 - 5474414
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| | ||||| | || |||||||||||||||||||||||| ||||||    
T  5474361 tttaatgtttgatgtaccggtatactcaaaatgttggatgtaccataaaatttg 5474414  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 26117791 - 26117746
Alignment:
Q  13 gtgtactgatacactcaaa-atgttggatgtaccatagaatttgtc 57  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||    
T  26117791 gtgtactgatacactcaaatatattggatgtaccataaaatttgtc 26117746  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 52940515 - 52940482
Alignment:
Q  22 tacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||||||| |||||||||||||||||||||||    
T  52940515 tacactcaaattgttggatgtaccatagaatttg 52940482  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 337507 - 337539
Alignment:
Q  23 acactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||||| |||||||||||||||||||||    
T  337507 acactcaaaattttggatgtaccatagaatttg 337539  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 37992053 - 37992093
Alignment:
Q  22 tacactcaaaatgttggatgtaccatagaatttgtctaaaa 62  Q
    ||||||||||||||||| ||||||||| |||||||| ||||    
T  37992053 tacactcaaaatgttgggtgtaccataaaatttgtcaaaaa 37992093  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 48262617 - 48262565
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaattt 54  Q
    ||||||||| ||||||| |||||||||||||| ||   |||||||||||||||    
T  48262617 tttaatgtttggtgtaccgatacactcaaaattttaagtgtaccatagaattt 48262565  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 50732906 - 50732850
Alignment:
Q  13 gtgtactgatacactcaaa-atgttggatgtaccatagaatttgtctaaaattaatc 68  Q
    |||||| |||||||||||| ||  |||||||||||||||||||| ||||| ||||||    
T  50732906 gtgtaccgatacactcaaatatagtggatgtaccatagaatttgcctaaacttaatc 50732850  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14872676 - 14872737
Alignment:
Q  1 ttttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaaaa 62  Q
    |||||||||| ||||||| | ||||||||| ||||||| |||||||||||||||| ||||||    
T  14872676 ttttaatgtttggtgtaccggtacactcaagatgttgggtgtaccatagaatttgcctaaaa 14872737  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 3954268 - 3954311
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    
T  3954268 ggtgtactggtacactcaaaatgttagatgtaccatagaatttg 3954311  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 11273779 - 11273821
Alignment:
Q  13 gtgtactgatacactcaaaatgttggatgtaccatagaatttg 55  Q
    |||||| ||||||||||||||||| ||||||||||||||||||    
T  11273779 gtgtaccgatacactcaaaatgttagatgtaccatagaatttg 11273821  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 14501081 - 14501023
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaatttgtctaa 60  Q
    ||||| ||| ||||||| | ||||||||||||||||||||||||||| |||||| ||||    
T  14501081 tttaacgtttggtgtaccggtacactcaaaatgttggatgtaccatataatttgcctaa 14501023  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 22084867 - 22084826
Alignment:
Q  13 gtgtactgatacactcaaaatgttggatgtaccatagaattt 54  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  22084867 gtgtaccggtacactcaaaatgttggatgtaccatagaattt 22084826  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 926575 - 926540
Alignment:
Q  22 tacactcaaaatgttggatgtaccatagaatttgtc 57  Q
    ||||||||||||||||||||||||||| ||||||||    
T  926575 tacactcaaaatgttggatgtaccataaaatttgtc 926540  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 4979448 - 4979496
Alignment:
Q  12 ggtgtactgatacactcaaa-atgttggatgtaccatagaatttgtcta 59  Q
    ||||||| |||||||||||| ||||||| |||||| |||||||||||||    
T  4979448 ggtgtaccgatacactcaaatatgttgggtgtaccgtagaatttgtcta 4979496  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 17545650 - 17545606
Alignment:
Q  12 ggtgtactgatacactcaaaatgttggatgtaccatagaatttgt 56  Q
    |||||||  ||||||||||| |||||| |||||||||||||||||    
T  17545650 ggtgtaccaatacactcaaattgttgggtgtaccatagaatttgt 17545606  T

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Target: scaffold0325 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 1584 - 1620
Alignment:
Q  22 tacactcaaaatgttggatgtaccatagaatttgtct 58  Q
    |||||||||||||||||||||||||||||||||||||    
T  1584 tacactcaaaatgttggatgtaccatagaatttgtct 1620  T

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Target: scaffold0067 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 41443 - 41391
Alignment:
Q  2 tttaatgttgggtgtactgatacactcaaaatgttggatgtaccatagaattt 54  Q
    ||||||||| ||||||| | ||||||||||||||||  |||||||||||||||    
T  41443 tttaatgtttggtgtaccggtacactcaaaatgttgagtgtaccatagaattt 41391  T

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