View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6478_low_15 (Length: 250)

Name: NF6478_low_15
Description: NF6478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6478_low_15
NF6478_low_15
[»] chr3 (7 HSPs)
chr3 (23-235)||(24595143-24595360)
chr3 (14-235)||(51308724-51308955)
chr3 (14-227)||(20871255-20871484)
chr3 (14-140)||(20868714-20868841)
chr3 (15-140)||(27462145-27462270)
chr3 (14-140)||(51306368-51306493)
chr3 (103-140)||(35610835-35610872)
[»] chr4 (4 HSPs)
chr4 (14-235)||(55849425-55849656)
chr4 (54-140)||(55852052-55852137)
chr4 (174-222)||(15040083-15040130)
chr4 (174-222)||(15114294-15114341)
[»] chr1 (5 HSPs)
chr1 (34-227)||(20225517-20225719)
chr1 (169-235)||(12685020-12685086)
chr1 (36-128)||(20226850-20226942)
chr1 (170-222)||(16385488-16385540)
chr1 (14-140)||(16385601-16385725)
[»] chr8 (14 HSPs)
chr8 (146-235)||(4678009-4678098)
chr8 (14-140)||(12062804-12062931)
chr8 (14-140)||(35416095-35416221)
chr8 (169-235)||(19472664-19472730)
chr8 (169-235)||(19543589-19543655)
chr8 (169-235)||(19589041-19589107)
chr8 (169-229)||(3785972-3786032)
chr8 (22-140)||(31909113-31909229)
chr8 (20-140)||(3785802-3785920)
chr8 (14-140)||(369301-369425)
chr8 (14-98)||(3788506-3788591)
chr8 (14-87)||(19472489-19472563)
chr8 (14-87)||(19543414-19543488)
chr8 (14-87)||(19589208-19589282)
[»] chr2 (1 HSPs)
chr2 (14-139)||(26608014-26608138)
[»] chr6 (4 HSPs)
chr6 (15-140)||(9664639-9664764)
chr6 (34-140)||(787305-787411)
chr6 (15-133)||(3074956-3075075)
chr6 (14-131)||(21146825-21146941)
[»] chr7 (2 HSPs)
chr7 (14-140)||(2577018-2577142)
chr7 (169-227)||(26389102-26389160)
[»] chr5 (2 HSPs)
chr5 (37-116)||(27172855-27172934)
chr5 (14-138)||(18587369-18587499)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 24595360 - 24595143
Alignment:
Q  23 catctatgaagatagagagaaaagcttagaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgagtcaatcatg 122  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  24595360 catccatgaagatagagagaaaagcttagaaactattgtattgatgatagttgaaaatgatacaagaatgaaaaagattagtacaaatgagtcaaccatg 24595261  T
Q  123 tgacttatatagta-----actagtgtcctaactataacattattcttaatagcctccctcaaactcaaggtaagagaactcttagcttaagtttgaatt 217  Q
    ||||||||||||||     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  24595260 tgacttatatagtaactaaactagtgtcctaactatatcattattcttaatagcctccctcaaactcaaggtaagataactcttagcttgagtttgaatt 24595161  T
Q  218 acaaagctaacagcaaac 235  Q
    ||||||||||||||||||    
T  24595160 acaaagctaacagcaaac 24595143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 51308955 - 51308724
Alignment:
Q  14 gaaacatggcatctatgaagatagagagaaaa-gcttagaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatga 112  Q
    |||||||| |||| ||||| |||||||||||| ||||| ||| |||| ||||||| |||||||||| |||||||||||| ||| ||| ||||||||||||    
T  51308955 gaaacatgacatccatgaaaatagagagaaaaagcttataaattattgtattgataatagttgaaa-tgatacaagaataaaagagattagtacaaatga 51308857  T
Q  113 gtcaatcatgtgacttatatagta-----actagtgtcc----taactataacattattcttaatagcctccctcaaactcaaggtaagagaactcttag 203  Q
    ||||| ||||||||||||||||||     ||||| ||||    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  51308856 gtcaaccatgtgacttatatagtaactacactagcgtcctaattaactatatcattattcttaatagcctccctcaaactcaaggtaagagaactcttaa 51308757  T
Q  204 cttaagtttgaattacaaagc-taacagcaaac 235  Q
    ||| |||||||| |||||||| |||||||||||    
T  51308756 cttgagtttgaactacaaagcttaacagcaaac 51308724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 20871484 - 20871255
Alignment:
Q  14 gaaacatggcatctatgaagatagagagaaaagcttagaaa------ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtaca 107  Q
    |||||||| |||| ||||| | |||||||||||||||||||       |||| |||||||||||||||||||| ||||||||||||||||||   |||||    
T  20871484 gaaacatgacatccatgaaaagagagagaaaagcttagaaaactattgtattgtattgatgatagttgaaaataatacaagaatgaaaaagataggtaca 20871385  T
Q  108 aatgagtcaatcatgtgacttatatagt------aactagtgtc----ctaactataacattattcttaatagcctccctcaaactcaaggtaagagaac 197  Q
    |||||||||| |||||||||||||||||      ||||||| ||    ||||||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  20871384 aatgagtcaaccatgtgacttatatagtaactaaaactagtatcctaactaactatatcatcattcttaataccctccctcaaactcaaggtaagagaac 20871285  T
Q  198 tcttagcttaagtttgaattacaaagctaa 227  Q
    ||||| ||| |||||| |||||||||||||    
T  20871284 tcttaacttgagtttggattacaaagctaa 20871255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 20868841 - 20868714
Alignment:
Q  14 gaaacatggcatctatgaagatagagagaaaagcttagaaa-ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatga 112  Q
    ||||||||||||| ||||| | ||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||   |||||||| |    
T  20868841 gaaacatggcatccatgaaaagagagagaaaagcttagaaaactattgtattgatgatagttgaacataatacaagaatgaaaaagataggtacaaataa 20868742  T
Q  113 gtcaatcatgtgacttatatagtaacta 140  Q
    ||||| ||||||||||||||||||||||    
T  20868741 gtcaaccatgtgacttatatagtaacta 20868714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 27462270 - 27462145
Alignment:
Q  15 aaacatggcatctatgaagatagagagaaaagcttagaaa-ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgag 113  Q
    |||||||||||| ||| | |||||||||||||||| |||| ||||| ||||||| |||||||||| ||||||||||||||||||||   |||||||||||    
T  27462270 aaacatggcatccatggatatagagagaaaagcttggaaaactattgtattgattatagttgaaa-tgatacaagaatgaaaaagataggtacaaatgag 27462172  T
Q  114 tcaatcatgtgacttatatagtaacta 140  Q
    |||| ||| ||||||||||||||||||    
T  27462171 tcaaccatatgacttatatagtaacta 27462145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 51306493 - 51306368
Alignment:
Q  14 gaaacatggcatctatgaagatagagagaaaa-gcttagaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatga 112  Q
    |||||||| |||| ||||| |||||||||||| ||||||||| |||| ||||||| |||||| |||||||||||| ||| ||| ||| |||||  |||||    
T  51306493 gaaacatgacatccatgaaaatagagagaaaaagcttagaaattattgtattgataatagtt-aaaatgatacaaaaataaaagagattagta-taatga 51306396  T
Q  113 gtcaatcatgtgacttatatagtaacta 140  Q
    ||||| ||| | | ||||||||||||||    
T  51306395 gtcaaccatataagttatatagtaacta 51306368  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 35610872 - 35610835
Alignment:
Q  103 gtacaaatgagtcaatcatgtgacttatatagtaacta 140  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  35610872 gtacaaatgagtcaaccttgtgacttatatagtaacta 35610835  T

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Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 55849425 - 55849656
Alignment:
Q  14 gaaacatggcatctatgaagatagagagaaaagcttag--aaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatg 111  Q
    ||||||||||||| ||| | |||||||||||||||| |  |||||||| |||||||||||||||||| ||||||||||||| ||||||   |||||||||    
T  55849425 gaaacatggcatccatggatatagagagaaaagcttgggaaaactattgtattgatgatagttgaaa-tgatacaagaatggaaaagataggtacaaatg 55849523  T
Q  112 agtcaatcatgtgacttatatagtaact-----agtgtc----ctaactataacattattcttaatagcctccctcaaactcaaggtaagagaactctta 202  Q
    |||||| |||||||||||||||||||||     ||||||    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  55849524 agtcaaccatgtgacttatatagtaactgaactagtgtcctaactaactatatcattattcttaatagcctccctcaaactcaaggtaagataactctta 55849623  T
Q  203 gcttaagtttgaattacaaagctaacagcaaac 235  Q
    |||| ||||||||||||||||||||||||||||    
T  55849624 gcttgagtttgaattacaaagctaacagcaaac 55849656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 55852052 - 55852137
Alignment:
Q  54 actattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgagtcaatcatgtgacttatatagtaacta 140  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||||  | |||||||||||||| ||||| | ||||||||||||||    
T  55852052 actattgtattgatgatagttgaaa-tgatacaagaatgtaaaagataactacaaatgagtcaaccatgttagttatatagtaacta 55852137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 15040083 - 15040130
Alignment:
Q  174 ccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaa 222  Q
    ||||||||||||||||||||||| |||| |||| |||||||| ||||||    
T  15040083 ccctcaaactcaaggtaagagaattctt-gcttgagtttgaaatacaaa 15040130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 15114341 - 15114294
Alignment:
Q  174 ccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaa 222  Q
    ||||||||||||||||||||||| |||| |||| |||||||| ||||||    
T  15114341 ccctcaaactcaaggtaagagaattctt-gcttgagtttgaaatacaaa 15114294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 20225517 - 20225719
Alignment:
Q  34 atagagagaaaagcttagaaa-ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgagtcaatcatgtgacttatat 132  Q
    ||||||||||||||||  ||| ||||| ||||||||||| |||||| ||||||||||||| ||||||   ||||||| ||||||| ||||||||||||||    
T  20225517 atagagagaaaagcttgcaaaactattgtattgatgataattgaaa-tgatacaagaatggaaaagataggtacaaaagagtcaaccatgtgacttatat 20225615  T
Q  133 agtaact-----agtgtc----ctaactataacattattcttaatagcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaag 223  Q
    |||||||     ||||||    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  20225616 agtaactaaactagtgtcctaactaactatatcattattcttaatagcctccctcaaactcaaggtaagagaactcttagattgagtttgaattacaaag 20225715  T
Q  224 ctaa 227  Q
    ||||    
T  20225716 ctaa 20225719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 12685086 - 12685020
Alignment:
Q  169 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacagcaaac 235  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  12685086 agcctccctcaaactcaaggtaagagaactcttaacttgagtttgaattacaaagctaacaccaaac 12685020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 20226850 - 20226942
Alignment:
Q  36 agagagaaaagctt-agaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgagtcaatcatgtgactt 128  Q
    ||||||||||| || | |||||||| ||||||||||| |||||| ||||||||||||||||||||   ||||||| ||||||| ||||| ||||    
T  20226850 agagagaaaagtttgaaaaactattgtattgatgataattgaaa-tgatacaagaatgaaaaagataggtacaaaagagtcaaccatgtaactt 20226942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 16385540 - 16385488
Alignment:
Q  170 gcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaa 222  Q
    |||||| ||||||||||||||||| |||| ||| ||| |||||||||||||||    
T  16385540 gcctccatcaaactcaaggtaagataactattaacttgagtttgaattacaaa 16385488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 16385725 - 16385601
Alignment:
Q  14 gaaacatggcatctatgaagatagagag-aaaagcttagaaa-ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatg 111  Q
    ||||||||||||| ||||| ||||| || ||||||||| |||  |||| ||||||| ||||  ||||||||||||| ||||||| |||   |||||||||    
T  16385725 gaaacatggcatccatgaaaatagaaagaaaaagcttacaaagttattgtattgattatag-ggaaaatgatacaaaaatgaaagaga--tgtacaaatg 16385629  T
Q  112 agtcaatcatgtgacttatatagtaacta 140  Q
    |||||| | ||||||||||| ||| ||||    
T  16385628 agtcaa-cttgtgacttatacagtgacta 16385601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 4678098 - 4678009
Alignment:
Q  146 ctaactataacattattcttaatagcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacagcaaac 235  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  4678098 ctaactatatcattattcttaatagcctccctcaaactcaaggtaagagaactcttagcttgaatttgaattacaaagctaacagcaaac 4678009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 12062931 - 12062804
Alignment:
Q  14 gaaacatggcatctatgaagatagagagaaaagcttag-aaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatga 112  Q
    ||||||||||||| ||||| |||||||||||||||||| |||||||| | |||||||| ||||||||| |||||||||||||| |     ||||||||||    
T  12062931 gaaacatggcatccatgaaaatagagagaaaagcttagaaaactattctcttgatgatggttgaaaataatacaagaatgaaagatgtgggtacaaatga 12062832  T
Q  113 gtcaatcatgtgacttatatagtaacta 140  Q
    ||||| ||||||||||||||||||||||    
T  12062831 gtcaaccatgtgacttatatagtaacta 12062804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 35416095 - 35416221
Alignment:
Q  14 gaaacatggcatctatgaagatagagagaaaagctt-agaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatga 112  Q
    ||||||||||||| || || |||||||||||||||| | |||||||| |||| ||| ||||||||| |||||||| |||||| ||||  |||||||||||    
T  35416095 gaaacatggcatccataaaaatagagagaaaagcttgaaaaactattgtattaatggtagttgaaa-tgatacaataatgaagaagataagtacaaatga 35416193  T
Q  113 gtcaatcatgtgacttatatagtaacta 140  Q
    ||||| ||||||||||||||||| ||||    
T  35416194 gtcaaccatgtgacttatatagtcacta 35416221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 19472664 - 19472730
Alignment:
Q  169 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacagcaaac 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  19472664 agcctccctcaaactcaaggtaagagaactcttagcttgagtttgaattacaaagcaaacaccaaac 19472730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 19543589 - 19543655
Alignment:
Q  169 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacagcaaac 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  19543589 agcctccctcaaactcaaggtaagagaactcttagcttgagtttgaattacaaagcaaacaccaaac 19543655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 19589107 - 19589041
Alignment:
Q  169 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacagcaaac 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  19589107 agcctccctcaaactcaaggtaagagaactcttagcttgagtttgaattacaaagcaaacaccaaac 19589041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 3785972 - 3786032
Alignment:
Q  169 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaaca 229  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  3785972 agccttcctcaaactcaaggaaagagaactcttagcttgagtttgaattacaaagctaaca 3786032  T

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Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 31909113 - 31909229
Alignment:
Q  22 gcatctatgaagatagagagaaaagcttagaaa-ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgagtcaatca 120  Q
    ||||| ||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||| ||||||| |||   ||||||||||||||| |     
T  31909113 gcatccatgaaaatagagagaaaagcttacaaagctattgtattgatgatagttgaaaa-gatacaa-aatgaaagagagaggtacaaatgagtcaa-ct 31909209  T
Q  121 tgtgacttatatagtaacta 140  Q
    ||||||||||||||| ||||    
T  31909210 tgtgacttatatagtgacta 31909229  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 3785802 - 3785920
Alignment:
Q  20 tggcatctatgaagatagagagaa-aagcttag-aaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgagtcaa 117  Q
    ||||||| ||||| |||||||||| |||||||| ||| |||| ||||||| |||||||||| |||||||||||| ||||||  |  ||||||||||||||    
T  3785802 tggcatccatgaaaatagagagaagaagcttaggaaattattgtattgataatagttgaaa-tgatacaagaataaaaaag--tgatacaaatgagtcaa 3785898  T
Q  118 tcatgtgacttatatagtaacta 140  Q
     | ||||||||||||||| ||||    
T  3785899 -cttgtgacttatatagtgacta 3785920  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 369425 - 369301
Alignment:
Q  14 gaaacatggcatctatgaagatagagagaaaagcttagaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgag 113  Q
    |||||||| |||| ||||| ||| |||||||| |||| || ||||| ||||||||||||||||||| ||||||| ||| ||| |||   |||||||| ||    
T  369425 gaaacatgacatccatgaaaataaagagaaaaacttacaa-ctattgtattgatgatagttgaaaa-gatacaaaaataaaagagatcggtacaaattag 369328  T
Q  114 tcaatcatgtgacttatatagtaacta 140  Q
     ||| ||| |||||||| |||||||||    
T  369327 ccaaccatatgacttatttagtaacta 369301  T

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Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 3788506 - 3788591
Alignment:
Q  14 gaaacatggcatctatgaagatagagagaa-aagcttag-aaactattatattgatgatagttgaaaatgatacaagaatgaaaaag 98  Q
    ||||||||||||| ||||| |||||||||| ||| |||| ||| |||| ||||||| ||||||| ||||||||||||||||||||||    
T  3788506 gaaacatggcatccatgaaaatagagagaagaagtttagaaaattattgtattgataatagttg-aaatgatacaagaatgaaaaag 3788591  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 19472489 - 19472563
Alignment:
Q  14 gaaacatggcatctatgaagatagagag-aaaagctt-agaaactattatattgatgatagttgaaaatgatacaa 87  Q
    ||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||  ||||||| |||||||||||    
T  19472489 gaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttg-aaatgatacaa 19472563  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 19543414 - 19543488
Alignment:
Q  14 gaaacatggcatctatgaagatagagag-aaaagctt-agaaactattatattgatgatagttgaaaatgatacaa 87  Q
    ||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||  ||||||| |||||||||||    
T  19543414 gaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttg-aaatgatacaa 19543488  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 19589282 - 19589208
Alignment:
Q  14 gaaacatggcatctatgaagatagagag-aaaagctt-agaaactattatattgatgatagttgaaaatgatacaa 87  Q
    ||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||  ||||||| |||||||||||    
T  19589282 gaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttg-aaatgatacaa 19589208  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 26608014 - 26608138
Alignment:
Q  14 gaaacatggcatctatgaagatagagagaaaagcttagaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgag 113  Q
    |||||||| |||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||   ||||| |||||    
T  26608014 gaaacatgacatccatgaaaatagagagaaaagcttagaaa-tattgtattgatgatagttgaaaatgatacaagaatgaaaaagataggtacagatgag 26608112  T
Q  114 tcaatcatgtgacttatatagtaact 139  Q
    |||| | |||||||||||||||||||    
T  26608113 tcaaccttgtgacttatatagtaact 26608138  T

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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 9664639 - 9664764
Alignment:
Q  15 aaacatggcatctatgaagatagagagaaaagctt-agaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgag 113  Q
    |||||||||||| ||| | |||||||||||||||| | |||||||| ||||||| |||||||||| ||||||||||||||||||||   |||||||||||    
T  9664639 aaacatggcatccatggatatagagagaaaagcttgaaaaactattgtattgattatagttgaaa-tgatacaagaatgaaaaagataggtacaaatgag 9664737  T
Q  114 tcaatcatgtgacttatatagtaacta 140  Q
    |||| ||||||||||||||||||||||    
T  9664738 tcaaccatgtgacttatatagtaacta 9664764  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 787411 - 787305
Alignment:
Q  34 atagagagaaaagcttagaaa-ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgagtcaatcatgtgacttatat 132  Q
    ||||||||||||| || |||| ||||| ||||||||||| |||||| |||||||||||||| |||||   ||||||||||||||||||| ||||||||||    
T  787411 atagagagaaaagtttggaaaactattgtattgatgatacttgaaa-tgatacaagaatgagaaagatcggtacaaatgagtcaatcatatgacttatat 787313  T
Q  133 agtaacta 140  Q
    ||||||||    
T  787312 agtaacta 787305  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 3075075 - 3074956
Alignment:
Q  15 aaacatggcatctatgaagatagagagaaaagcttag-aaactattata-ttgatgatagttgaaaatgatacaagaatgaaaaagactag-tacaaatg 111  Q
    |||||||||||| ||| | |||||||||||||||| | |||||||| || ||||||||||||| |||||||| ||||||| |||||| ||| ||||||||    
T  3075075 aaacatggcatccatggatatagagagaaaagcttggaaaactattgtatttgatgatagttg-aaatgatataagaatggaaaaga-tagatacaaatg 3074978  T
Q  112 agtcaatcatgtgacttatata 133  Q
    || ||| ||||||| |||||||    
T  3074977 agacaaccatgtgatttatata 3074956  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 21146825 - 21146941
Alignment:
Q  14 gaaacatggcatctatgaagatagagag-aaaagcttag-aaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatg 111  Q
    |||||||| |||| ||||| |||||||| |||| ||||| ||| |||| ||||||  ||||||| |||||||||||||||| ||||||   |||||||||    
T  21146825 gaaacatgtcatccatgaaaatagagagaaaaaacttagaaaattattgtattgaaaatagttg-aaatgatacaagaatg-aaaagagaggtacaaatg 21146922  T
Q  112 agtcaatcatgtgacttata 131  Q
    |||||| |||||||||||||    
T  21146923 agtcaa-catgtgacttata 21146941  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 2577142 - 2577018
Alignment:
Q  14 gaaacatggcatctatgaagatagagagaa-aagcttagaaact-attatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatg 111  Q
    ||||||||||||| ||||| |||||||||| ||||||||||| | ||| ||||||| |||||||||| |||||||||||||||||||  |  ||||||||    
T  2577142 gaaacatggcatccatgaaaatagagagaagaagcttagaaaattattgtattgataatagttgaaa-tgatacaagaatgaaaaag--tgatacaaatg 2577046  T
Q  112 agtcaatcatgtgacttatatagtaacta 140  Q
    |||||| | ||||||||||||||| ||||    
T  2577045 agtcaa-cttgtgacttatatagtgacta 2577018  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 26389160 - 26389102
Alignment:
Q  169 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaa 227  Q
    |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  26389160 agcctccctcaaactcaaggtaagagaactcttagcttgagtatggattacaaagctaa 26389102  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 27172855 - 27172934
Alignment:
Q  37 gagagaaaagcttagaaa-ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactag-tacaaatgagtca 116  Q
    ||||||||||||| |||| ||||| ||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||    
T  27172855 gagagaaaagcttggaaaactattctattgatgatagttg-aaatgatacaagaatggaaaaga-tagttacaaatgagtca 27172934  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 18587369 - 18587499
Alignment:
Q  14 gaaacatggcatctatgaagatagagag-aaaagcttagaaactattatattgatgatagttgaaaatgatacaagaatgaa-----aaagact-agtac 106  Q
    ||||||||||||| ||| | |||||||| |||| ||||||||   ||||||||||||||||| ||||||||||||  |||||     ||||| |  ||||    
T  18587369 gaaacatggcatccatggaaatagagagaaaaaacttagaaaaatttatattgatgatagtt-aaaatgatacaaagatgaaagatgaaagagtcggtac 18587467  T
Q  107 aaatgagtcaatcatgtgacttatatagtaac 138  Q
    |||||| |||| | ||||||||||||||||||    
T  18587468 aaatgaatcaaccttgtgacttatatagtaac 18587499  T

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