View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6478_low_16 (Length: 235)

Name: NF6478_low_16
Description: NF6478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6478_low_16
NF6478_low_16
[»] chr4 (9 HSPs)
chr4 (18-235)||(37245006-37245223)
chr4 (29-210)||(37241994-37242181)
chr4 (26-141)||(37253096-37253211)
chr4 (26-136)||(37232847-37232957)
chr4 (141-197)||(37241923-37241979)
chr4 (82-141)||(37237812-37237871)
chr4 (140-196)||(37232772-37232828)
chr4 (138-194)||(37237697-37237753)
chr4 (140-178)||(37241889-37241927)
[»] scaffold1652 (4 HSPs)
scaffold1652 (34-197)||(338-501)
scaffold1652 (128-206)||(170-248)
scaffold1652 (126-192)||(265-331)
scaffold1652 (140-192)||(520-572)
[»] scaffold0902 (3 HSPs)
scaffold0902 (26-197)||(3363-3537)
scaffold0902 (141-206)||(3574-3639)
scaffold0902 (140-196)||(3297-3353)
[»] scaffold1176 (3 HSPs)
scaffold1176 (34-193)||(123-282)
scaffold1176 (26-145)||(1288-1407)
scaffold1176 (140-190)||(303-353)
[»] chr6 (7 HSPs)
chr6 (31-193)||(14316847-14317006)
chr6 (34-135)||(14254119-14254223)
chr6 (125-193)||(14248376-14248444)
chr6 (43-206)||(14351555-14351724)
chr6 (31-99)||(14248312-14248380)
chr6 (140-181)||(14248241-14248282)
chr6 (140-192)||(14254048-14254100)
[»] scaffold0002 (1 HSPs)
scaffold0002 (125-193)||(165282-165350)
[»] scaffold1801 (3 HSPs)
scaffold1801 (26-133)||(70-174)
scaffold1801 (140-181)||(199-240)
scaffold1801 (154-186)||(26-58)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 37245006 - 37245223
Alignment:
Q  18 ggagtaatagcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||| |||||||||||||||||||||||||    
T  37245006 ggagtaatagcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggaatgctcttcgcaggcacgggagcagatgccgccgttgagt 37245105  T
Q  118 tagcggagggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaagcagcggcagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37245106 tagcggagggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaagcagcggcagc 37245205  T
Q  218 tggagaatcaggagcggc 235  Q
    ||||||| ||||||||||    
T  37245206 tggagaaccaggagcggc 37245223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 37241994 - 37242181
Alignment:
Q  29 aggaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcg------ 122  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||||||||| |||| | ||||||||||||| ||||||| ||| ||||||||||          
T  37241994 aggaggaggagatggtggagagttgatggcggacggtgaaggagaaggactgctcgttacaggtacgggagaagatgccaccggtgagttagcgctggtg 37242093  T
Q  123 gagggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaagcag 210  Q
    ||||||| |||||| |||||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||| ||||||||||    
T  37242094 gagggagcaatcgcaggtgatggtgcttgagatggaggagttgagatcgacaatggagtaactgcaggagcggcaacaggagaagcag 37242181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 37253096 - 37253211
Alignment:
Q  26 agcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcggag 125  Q
    |||||||||||||||||||||||||||| |||  || ||||| ||||| |||  | |||||||||||| ||||||||||||||||| ||||| |||||||    
T  37253096 agcaggaggaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtatgggagcagatgccgccggtgagtcagcggag 37253195  T
Q  126 ggagaaatcgctggtg 141  Q
    ||||| ||||| ||||    
T  37253196 ggagagatcgcaggtg 37253211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 37232847 - 37232957
Alignment:
Q  26 agcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcggag 125  Q
    |||||||||||||||||||||||||||| ||| ||| || || ||||| |||    ||||||||||| |||||| |||||| |||| ||||| |||||||    
T  37232847 agcaggaggaggagatggtggagagttgatggcggatggcgaaggagatggagaattcttcacaggtgcgggaggagatgcagccggtgagtgagcggag 37232946  T
Q  126 ggagaaatcgc 136  Q
    ||||| |||||    
T  37232947 ggagagatcgc 37232957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 37241923 - 37241979
Alignment:
Q  141 gatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggca 197  Q
    |||||||||| || ||||||||||||||| ||||||||||| | |||||||||||||    
T  37241923 gatggtgctttagttggaggagtagagattgacgatggagtaatagcaggagcggca 37241979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 37237812 - 37237871
Alignment:
Q  82 tcttcacaggtacgggagcagatgccgccgttgagttagcggagggagaaatcgctggtg 141  Q
    |||||||||||||||||| ||||||| ||| ||||| |||||||||||| ||||| ||||    
T  37237812 tcttcacaggtacgggaggagatgccaccggtgagtcagcggagggagagatcgcaggtg 37237871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 37232772 - 37232828
Alignment:
Q  140 tgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggc 196  Q
    ||||||||||| ||  |||||||| |||||||| |||||||| ||||||||||||||    
T  37232772 tgatggtgcttcagcaggaggagtggagatcgatgatggagtaacagcaggagcggc 37232828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 37237697 - 37237753
Alignment:
Q  138 ggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcg 194  Q
    ||||| ||||||| ||| |||||||||||||| || |||||||| ||||||||||||    
T  37237697 ggtgaaggtgcttcagaaggaggagtagagatggatgatggagtaacagcaggagcg 37237753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 37241889 - 37241927
Alignment:
Q  140 tgatggtgcttgagatggaggagtagagatcgacgatgg 178  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  37241889 tgatggtgctttagttggaggagtagagatcgacgatgg 37241927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 34 - 197
Target Start/End: Complemental strand, 501 - 338
Alignment:
Q  34 gaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcggagggagaaat 133  Q
    |||||||||||||||||||| |||  |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  501 gaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgccaccgttgagttagcggagggagaaat 402  T
Q  134 cgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggca 197  Q
    ||| ||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  401 cgcaggctatggtgcttgagatggaggagtagatatcgacgatggagtcacagcaggagcggca 338  T

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Target: scaffold1652; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 248 - 170
Alignment:
Q  128 agaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaa 206  Q
    ||||||||  || |||||| |||||||||||||||||||||||||||||||||  ||||||||||| ||| ||||||||    
T  248 agaaatcgtaggcgatggtacttgagatggaggagtagagatcgacgatggagagacagcaggagcagcagcgggagaa 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 331 - 265
Alignment:
Q  126 ggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag 192  Q
    ||||||||||  || |||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  331 ggagaaatcgtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggag 265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 572 - 520
Alignment:
Q  140 tgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag 192  Q
    ||||||||||| |||||| || |||||||||| ||||||||| | ||||||||    
T  572 tgatggtgctttagatggtggggtagagatcgccgatggagtaatagcaggag 520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 3363 - 3537
Alignment:
Q  26 agcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagat---gccgccgttgagttagcg 122  Q
    |||| ||||||||||||||||||||||| |||  |||||||| |||||||||| |||||||||||||||||||||||||   |  ||| |||||||||||    
T  3363 agcatgaggaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatatagatgccattgagttagcg 3462  T
Q  123 gagggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggca 197  Q
    |||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3463 gagggagaaatcgcaggcgttggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagtggca 3537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 3574 - 3639
Alignment:
Q  141 gatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaa 206  Q
    ||||||||||||| ||||||  ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  3574 gatggtgcttgagttggagggatagagatcgacgatggagtgacagcaggagcagcagcgggagaa 3639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 3297 - 3353
Alignment:
Q  140 tgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggc 196  Q
    ||||||||||| ||||||||| |||||||||| ||||||||| |  |||||||||||    
T  3297 tgatggtgctttagatggaggggtagagatcgccgatggagtaatggcaggagcggc 3353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 282 - 123
Alignment:
Q  34 gaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcggagggagaaat 133  Q
    |||||||||||  ||||||| |||  || ||||| |||||||||| ||||||||||||| | |||||||| ||||| ||||||||||| |||||||||||    
T  282 gaggagatggtctagagttgatggcagatggtgaaggagaaggactgctcttcacaggttcaggagcagacgccgcggttgagttagctgagggagaaat 183  T
Q  134 cgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagc 193  Q
    ||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  182 cgcaggcgatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggagc 123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 1407 - 1288
Alignment:
Q  26 agcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcggag 125  Q
    |||| ||||||||||||||||| ||||| |||   ||||||| |||||||||| |||||||||||||||  ||||| ||||||||||||||||||| |||    
T  1407 agcatgaggaggagatggtggacagttgatggcacacggtgaaggagaaggactgctcttcacaggtacacgagcatatgccgccgttgagttagctgag 1308  T
Q  126 ggagaaatcgctggtgatgg 145  Q
    ||||||||||| || |||||    
T  1307 ggagaaatcgcaggagatgg 1288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 353 - 303
Alignment:
Q  140 tgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcagg 190  Q
    ||||||||||| ||||||||| |||||||| ||||||||||| | ||||||    
T  353 tgatggtgctttagatggaggggtagagatggacgatggagtaatagcagg 303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 14316847 - 14317006
Alignment:
Q  31 gaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcggagggaga 130  Q
    |||||||||||| |||||||||| |||  ||||||||   |||||||| ||||||||||||||||||||||||||| |   |||||||||| || || ||    
T  14316847 gaggaggagatgatggagagttgatggcagacggtgaaatagaaggactgctcttcacaggtacgggagcagatgctg---ttgagttagctgatgggga 14316943  T
Q  131 aatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagc 193  Q
    |||||| || || ||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  14316944 aatcgcaggcgagggtgcttgagacggaggagtagagatcgatgatggagtcacatcaggagc 14317006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 14254119 - 14254223
Alignment:
Q  34 gaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagat---gccgccgttgagttagcggagggaga 130  Q
    |||||||||||||||||||| |||  |||||||| |||||||||| |||||||||||||||||||||||||   |  ||||||||| |||||||||||||    
T  14254119 gaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgaagatgccgttgagctagcggagggaga 14254218  T
Q  131 aatcg 135  Q
    |||||    
T  14254219 aatcg 14254223  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 14248376 - 14248444
Alignment:
Q  125 gggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagc 193  Q
    |||||||||||| || |||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  14248376 gggagaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagc 14248444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 14351555 - 14351724
Alignment:
Q  43 gtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcg------gagggagaaatcgc 136  Q
    ||||||||||| ||||||| | ||| ||||||||||  ||||| ||||||| ||||| ||||  | ||| ||||||||||      ||| |||||||||     
T  14351555 gtggagagttgatggtggatgatgaaggagaaggactactctttacaggtatgggagaagatatcaccggtgagttagcgccggttgagagagaaatcgt 14351654  T
Q  137 tggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaa 206  Q
     || ||||||||||||||||| ||||||||||  || |||||||| |||||||||||| || ||||||||    
T  14351655 aggcgatggtgcttgagatggtggagtagagactgatgatggagtaacagcaggagcgacagcgggagaa 14351724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 14248312 - 14248380
Alignment:
Q  31 gaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggag 99  Q
    |||||||||||| |||||||||| |||  |||||||| |||||||||| |||||||||||||| |||||    
T  14248312 gaggaggagatgatggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtatgggag 14248380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 14248241 - 14248282
Alignment:
Q  140 tgatggtgcttgagatggaggagtagagatcgacgatggagt 181  Q
    ||||||||||| ||||||||| |||||||||| |||||||||    
T  14248241 tgatggtgctttagatggaggggtagagatcgccgatggagt 14248282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 14254048 - 14254100
Alignment:
Q  140 tgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag 192  Q
    ||||||| ||| |||||||||  ||||||||||||||||||| | ||||||||    
T  14254048 tgatggtactttagatggagggatagagatcgacgatggagtaatagcaggag 14254100  T

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Target: scaffold0002 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 165350 - 165282
Alignment:
Q  125 gggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagc 193  Q
    |||||||||||| || |||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  165350 gggagaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagc 165282  T

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Target: scaffold1801 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 133
Target Start/End: Complemental strand, 174 - 70
Alignment:
Q  26 agcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcggag 125  Q
    |||| ||||||||||| ||||||||||| |||  |||||||| |||||||||| |||||||||||| || |||||||||   ||||||| |||||| |||    
T  174 agcatgaggaggagattgtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggaacaggagcagat---gccgttgggttagccgag 78  T
Q  126 ggagaaat 133  Q
    ||||||||    
T  77 ggagaaat 70  T

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Target: scaffold1801; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 240 - 199
Alignment:
Q  140 tgatggtgcttgagatggaggagtagagatcgacgatggagt 181  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||    
T  240 tgatgatgctttagatggaggggtagagatcgacgatggagt 199  T

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Target: scaffold1801; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 58 - 26
Alignment:
Q  154 atggaggagtagagatcgacgatggagtcacag 186  Q
    ||||||||||||||||||||||| |||||||||    
T  58 atggaggagtagagatcgacgatcgagtcacag 26  T

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