View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6478_low_18 (Length: 227)
Name: NF6478_low_18
Description: NF6478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6478_low_18 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1652 (1 HSPs) |
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| [»] scaffold0902 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 37245331 - 37245533
Alignment:
| Q |
1 |
gtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtggaacccagcagcagtgcaaccaaaagcatcagcaaaacggtgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
37245331 |
gtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaactgtggaatccagcagcagtgcaaccaaaagcatcagcacaacggtgta |
37245430 |
T |
|
| Q |
101 |
ggaagccatagtagaaagatgaagaaggagaatgggaatattagggtttgaagcagtgatat--tgttgtgaagaaaatattagggctgcaaaggttatt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37245431 |
ggaagccatagtagaaagatgaagaaggagaatgggaatattagggtttgaagcagtgatattgtgttgtgaagaaaatattagggctgcaaaggttatt |
37245530 |
T |
|
| Q |
199 |
tat |
201 |
Q |
| |
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||| |
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|
| T |
37245531 |
tat |
37245533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 21537198 - 21537169
Alignment:
| Q |
198 |
ttattataggcttaattgcacttttggacc |
227 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
21537198 |
ttattataggcttaattgcacttttggacc |
21537169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 14317162 - 14317245
Alignment:
| Q |
1 |
gtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtggaacccagcagcagtgcaaccaaaagcatca |
87 |
Q |
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||||||||||||||||| || |||| |||||||||||||||||||||||| | ||||| ||| | |||||||||||||||||||| |
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| T |
14317162 |
gtgatggaaacggagaagacttggg---tgatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaaccaaaagcatca |
14317245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 14248615 - 14248759
Alignment:
| Q |
1 |
gtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtggaacccagcagcagtgcaaccaaaagcatcagcaaaacggtgt- |
99 |
Q |
| |
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||||||||||||||||| || |||| | ||||||||||||||||||||||| | ||||| ||| | ||||||||| |||||||||| || | | | || |
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| T |
14248615 |
gtgatggaaacggagaagac-tggggg--gatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaacgaaaagcatcaacacagccgagtg |
14248711 |
T |
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| Q |
100 |
--aggaagccatagtagaaagatgaagaaggagaatgggaatattagggtt |
148 |
Q |
| |
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| ||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
14248712 |
agaagaagccatagtagaaagat---gaacgagaatgggaatattagggtt |
14248759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 165111 - 164967
Alignment:
| Q |
1 |
gtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtggaacccagcagcagtgcaaccaaaagcatcagcaaaacggtgt- |
99 |
Q |
| |
|
||||||||||||||||| || |||| | ||||||||||||||||||||||| | ||||| ||| | ||||||||| |||||||||| || | | | || |
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| T |
165111 |
gtgatggaaacggagaagac-tggggg--gatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaacgaaaagcatcaacacagccgagtg |
165015 |
T |
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| Q |
100 |
--aggaagccatagtagaaagatgaagaaggagaatgggaatattagggtt |
148 |
Q |
| |
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| ||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
165014 |
agaagaagccatagtagaaagat---gaacgagaatgggaatattagggtt |
164967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 78 - 1
Alignment:
| Q |
1 |
gtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtggaacccagcagcagtgcaaccaaaa |
81 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||||||||| |||||| | ||||| ||| | |||||||||||||| |
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| T |
78 |
gtgatggaaacggagaagacttggg---tgatgatggtggtgatctagcaacggcggaactcagaaacagtgcaaccaaaa |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 3759 - 3866
Alignment:
| Q |
41 |
tgatcgagcaaccgtggaacccagcagcagtgcaaccaaaagcatcagcaaaacgg---tgtaggaagccatagtagaaagatgaagaaggagaatggga |
137 |
Q |
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||||| |||||| | ||||| ||||| |||||||||||||||||||| || | ||| || | ||||||||||||||||||| |||||||||| ||| |
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| T |
3759 |
tgatctagcaacggcggaactcagcaacagtgcaaccaaaagcatcaacacagcggttttggaagaagccatagtagaaagat---gaaggagaatagga |
3855 |
T |
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| Q |
138 |
atattagggtt |
148 |
Q |
| |
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| ||||||||| |
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| T |
3856 |
aaattagggtt |
3866 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 227
Target Start/End: Original strand, 8313939 - 8313970
Alignment:
| Q |
196 |
atttattataggcttaattgcacttttggacc |
227 |
Q |
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|
|||||||||||||||||||||||||||||||| |
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| T |
8313939 |
atttattataggcttaattgcacttttggacc |
8313970 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 25982978 - 25983010
Alignment:
| Q |
195 |
tatttattataggcttaattgcacttttggacc |
227 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
25982978 |
tatttattttaggcttaattgcacttttggacc |
25983010 |
T |
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