View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6478_low_5 (Length: 349)
Name: NF6478_low_5
Description: NF6478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6478_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 7962988 - 7962665
Alignment:
| Q |
14 |
atatatatcaatgtggcaattggtatgaatcgatacttcaatgctatacacccaccttaatttattccatggtatgatgatgtttcattcacacatgaag |
113 |
Q |
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| T |
7962988 |
atatatatcaatgtggcaattggtatgaatcgatacttcaatgctgtacacccaccttaatttattccacggtatgatgatgtttcattcacacatgaag |
7962889 |
T |
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| Q |
114 |
ggtcaatgtctttagttttcagccagtcactagaagttgaggacaatcagaaagttttaattttcagctacctttccattgattaaataaccaaaaatga |
213 |
Q |
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| T |
7962888 |
ggtcaatatctttagttttcagccagtcactagaagttcaggacaatcagaaagttttaattttcagctacctttccattgattaaataaccaaaaatga |
7962789 |
T |
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| Q |
214 |
atattatcttggca-----aattgatcagaagttagcacacacatatacatatacaattagtagtaggtgggatccatacacaaagtttgacatcaaatt |
308 |
Q |
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| T |
7962788 |
atattatcttggcaaatataattgatcagaagttagcacacacatatacatatacaattagtagtaggtgggatccatacacaaagtttgacatcaaatt |
7962689 |
T |
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| Q |
309 |
gggttccaccttccaccacacttt |
332 |
Q |
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| T |
7962688 |
gggttccaccttccaccacacttt |
7962665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 153
Target Start/End: Original strand, 33575234 - 33575365
Alignment:
| Q |
14 |
atatatatcaatgtggcaattggtatgaatcgatacttcaatgctatacacccaccttaatttattccatggtatgatgatgtttcattcacacatgaag |
113 |
Q |
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|||| ||||||||| |||||||||||||||| | | || ||||| |||| ||||||||||||||| ||||||| ||||||||| |||||||| |
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| T |
33575234 |
atatgtatcaatgttgcaattggtatgaatcaacatttgaatgcattacatccaccttaatttattttatggtatcatgatgttt--ttcacaca----- |
33575326 |
T |
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| Q |
114 |
ggtcaatgtctttagttttcagccagtcactagaagttga |
153 |
Q |
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| T |
33575327 |
-ctcaacgtctttagtttttagtcggtcactagaagttga |
33575365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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