View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6478_low_8 (Length: 332)
Name: NF6478_low_8
Description: NF6478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6478_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 46451816 - 46451494
Alignment:
| Q |
1 |
ccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451816 |
ccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgct |
46451717 |
T |
|
| Q |
101 |
catctgccatattttcatcattattatttattaaaaaggtctcataaattttgacttaatttagtactttgcaaaattaat-ttctttcacataattaag |
199 |
Q |
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||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
46451716 |
catctgccatattatcatcatcattatttattaaaagggtctcataaattttgaccaaatttagtaatttgcaaaattaatcttctttcacataattaag |
46451617 |
T |
|
| Q |
200 |
aacaaacaaagataattttatttactagtatgctcacctttggcgaacgagtataagttggttgtggttgtggtggtggagttggtgctgatgttggtgt |
299 |
Q |
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|| ||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451616 |
aaaaaataaagataattttatttactactatgctcacctttggtgaacgagtataagttggttgtggttgtggtggtggagttggtgctgatgttggtgt |
46451517 |
T |
|
| Q |
300 |
aattgggtctacagccacctttg |
322 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
46451516 |
aattgggtctacaggcacctttg |
46451494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 46344740 - 46345050
Alignment:
| Q |
1 |
ccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344740 |
ccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgct |
46344839 |
T |
|
| Q |
101 |
catctgccatattttcatcattattatttattaaaaaggtctcataaattttgacttaatttagtactttgcaaaattaatttctttcacataattaaga |
200 |
Q |
| |
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|||||||||||||||||| |||| | ||| ||||| || || ||||||||| | || |||| |||||||| || ||| |||| |||| |||| ||| |
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| T |
46344840 |
catctgccatattttcattatta-aaattaataaaagggcctaataaattttaaacaaaattagcactttgcataactaa--tcttgcacacaattcaga |
46344936 |
T |
|
| Q |
201 |
acaaacaaagataattt-tatttactagtatgctcacctttggcgaacgagtataagttggttgtggttgtggtggtggagttggtgctgatgttggtgt |
299 |
Q |
| |
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|||||||||| |||| | ||| ||| ||||||||||||||| | ||||||||| | || |||||||||||||||||||||||||| || ||| |
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| T |
46344937 |
gaaaacaaagatgatttatttttgctactatgctcacctttggtgcacgagtatagg------ctgattgtggtggtggagttggtgctgatggtgttgt |
46345030 |
T |
|
| Q |
300 |
aattgggtctacagccacct |
319 |
Q |
| |
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||||||||||| || ||||| |
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| T |
46345031 |
aattgggtctagaggcacct |
46345050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 46462784 - 46462471
Alignment:
| Q |
1 |
ccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46462784 |
ccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaattttgtgct |
46462685 |
T |
|
| Q |
101 |
catctgccatattttcatcattattatttattaaaaaggtctcataaattttgacttaatttagtactttgcaaaattaatttctttcacataattaaga |
200 |
Q |
| |
|
|||||||||||||||||| |||| | ||| ||||| || || ||||||||| | || |||| |||||||| || ||| |||| |||| |||| ||| |
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| T |
46462684 |
catctgccatattttcattatta-aaattaataaaagggcctaataaattttaaacaaaattagcactttgcataactaa--tcttgcacacaattcaga |
46462588 |
T |
|
| Q |
201 |
acaaacaaagataattt-tatttactagtatgctcacctttggcgaacgagtataagttggttgtggttgtggtggtggagttggtgctgatgttggtgt |
299 |
Q |
| |
|
|||||||||| |||| | ||| ||| ||||||||||||||| | ||||||||| | || ||||||||||||||||||||||||||||||||| |
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| T |
46462587 |
gaaaacaaagatgatttatttttgctactatgctcacctttggtgcacgagtatagg------ctgattgtggtggtggagttggtgctgatgttggtgt |
46462494 |
T |
|
| Q |
300 |
aattgggtctacagccacctttg |
322 |
Q |
| |
|
||||| ||||||| ||||||| |
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| T |
46462493 |
aattgaatctacaggtacctttg |
46462471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 46471411 - 46471257
Alignment:
| Q |
1 |
ccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgct |
100 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46471411 |
ccacccccattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggtgctgccccaccaaaagccatcaaatccgaaaactttgtgct |
46471312 |
T |
|
| Q |
101 |
catctgccatattttcatcattattatttattaaaaaggtctcataaattttgac |
155 |
Q |
| |
|
||||||||| | | ||||| |||| | ||| | |||||||||| ||||||||| |
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|
| T |
46471311 |
tatctgccattatataatcatcattaatcatttagaaggtctcattaattttgac |
46471257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 46466206 - 46466097
Alignment:
| Q |
1 |
ccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgct |
100 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46466206 |
ccacccccattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggtgctgccccaccaaaagccatcaaatccgaaaactttgtgct |
46466107 |
T |
|
| Q |
101 |
catctgccat |
110 |
Q |
| |
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||||||||| |
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|
| T |
46466106 |
tatctgccat |
46466097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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