View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6478_low_9 (Length: 329)
Name: NF6478_low_9
Description: NF6478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6478_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 703148 - 702854
Alignment:
| Q |
14 |
atatacaagcaaaatacataaattgaattgttccnnnnnnnncatgaagacttcaatcttgtttgtgacagccttcttagctttagtaccttgtgcattt |
113 |
Q |
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| T |
703148 |
atatacaagcaaaatacataaattgaattgttccaaaaaaa-catgaagacttcaatcttgtttgtgacagccttcttagctttagcatcttgtgccttt |
703050 |
T |
|
| Q |
114 |
gcctttgatcccagccctttacaggacttttgtgtggatatcaatgacaccaggaatggtggtatgtatacttttttaacacttctttatttatttttac |
213 |
Q |
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| T |
703049 |
gcctttgatcccagccctttacaggacttttgtgtggctatcaatgacaccaagaatggtggtatgtatacttttttaacacttctttatttatttttac |
702950 |
T |
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| Q |
214 |
tcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgggttcgatctcatgtttgacaacaatgatatatacatatataag |
309 |
Q |
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| T |
702949 |
tcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgggttcgatctcatgtttgacaacattgatatatacatatataag |
702854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 712290 - 712586
Alignment:
| Q |
14 |
atatacaagcaaaatacataaattgaattgttccnnnnnnnncatgaagacttcaatcttgtttgtgacagccttcttagctttagtaccttgtgcattt |
113 |
Q |
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| T |
712290 |
atatacaagcaaaatacataaattgaattgttccaaaaaaa-catgaagacttcaatcttgtttgtgacagccttcttagctttagcatcttgtgccttt |
712388 |
T |
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| Q |
114 |
gcctttgatcccagccctttacaggacttttgtgtggatatcaatgacaccaggaatggtggtatgtatacttttttaacacttctttatttatttttac |
213 |
Q |
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| T |
712389 |
gcctttgatcccagccctttacaggacttttgtgtggctatcaatgacaccaagaatggtggtatgtatacttttttaacacttctttatttatttttac |
712488 |
T |
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| Q |
214 |
tcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgggttcgatctcatgtttgacaacaatgatatatacatatataagta |
311 |
Q |
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| T |
712489 |
tcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgggtttgatctcatgtatgacaactttgatatatacatatataagta |
712586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 718385 - 718264
Alignment:
| Q |
71 |
cttgtttgtgacagccttcttagctttagtaccttgtgcatttgcctttgatcccagccctttacaggacttttgtgtggatatcaatgacaccaggaat |
170 |
Q |
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| T |
718385 |
cttgtttgtgacagccttcttggccttagcatcatgtgcctttgcctttgatcccagccctctacaagacttttgtgtggctatcaatgacaccaagaat |
718286 |
T |
|
| Q |
171 |
ggtggtatgtatacttttttaa |
192 |
Q |
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| T |
718285 |
ggtggtatgtatgctcttttaa |
718264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 305
Target Start/End: Complemental strand, 711352 - 711117
Alignment:
| Q |
71 |
cttgtttgtgacagccttcttagctttagtaccttgtgcatttgcctttgatcccagccctttacaggacttttgtgtggatatcaatgacaccaggaat |
170 |
Q |
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| T |
711352 |
cttgtttttcacagccttcctagcattggcatcttgtgcctttgcatttgatcctagccctctacaagacttttgtgtggctatcaatgacaccaaaacg |
711253 |
T |
|
| Q |
171 |
ggtggtatgtatacttttttaacac----ttctttatttatttttactcgtttggttgaatctgttgaaccaattaaactatgatacaaaagtttcacgg |
266 |
Q |
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| T |
711252 |
ggtggtatgtatact-ttttaatacttttttatttatttattttgactcggttggtttaacctgataaaccgattgaactatgatacaataacttcacgg |
711154 |
T |
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| Q |
267 |
gttcgatctcatgtttgacaacaatgatatatacatata |
305 |
Q |
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|| |||||||||| | |||||| | |||||| |||||| |
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| T |
711153 |
gt--gatctcatgtctaacaacattcatatatccatata |
711117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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