View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6480_high_11 (Length: 280)
Name: NF6480_high_11
Description: NF6480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6480_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 263
Target Start/End: Original strand, 42861819 - 42862079
Alignment:
| Q |
4 |
cactggagttgtcgaagaaatatcttcgttggtgaaagatttaaatgaaatcaaagatcacctcagttttgctgattttgggacgttttctgcagttcag |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42861819 |
cactggagttgtcgaagaaatatcttcgttggtgaaagatttaaatgaaatcaaagatcacctcagttttgccgattttgggacgttttctgcagttcag |
42861918 |
T |
|
| Q |
104 |
atggctattggtcgttt-gagaacatcaaacttgctctatccaattatcatggtgtgcatcaagaacaacaggaagtttgtgggtgtattcaagaattga |
202 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42861919 |
atggctattggtcgttttgagaacatcaaacttgctctatccaattatcatggtgtgcatcaagaacaacaggaagtttgtgggtgtattcaagaattga |
42862018 |
T |
|
| Q |
203 |
tacagcatcgaacaaatgtgaatggtaagcatgaggaacttaaccaaagaaaacaacaagt |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42862019 |
tacagcatcgaacaaatgtgaatggtaagcatgaggaacttaaccaaagaaaacaacaagt |
42862079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 27574611 - 27574858
Alignment:
| Q |
23 |
atatcttcgttggtgaaagatttaaatgaaatcaaagatcacctcagttttgctgattttgggacgttttctgcagttcagatggctattggtcgtttg- |
121 |
Q |
| |
|
|||||||| ||| ||||| ||||| ||||||||||||| || ||||| || ||||||||| || ||||||| ||||||||||| | |||||||||| |
|
|
| T |
27574611 |
atatcttcattgttgaaaaatttagatgaaatcaaagaccatctcagccctgttgattttggaaccttttctgtagttcagatggttgttggtcgttttg |
27574710 |
T |
|
| Q |
122 |
--ag----------aacatcaaacttgctctatccaattatcatggtgtgcatcaagaacaacaggaagtttgtgggtgtattcaagaattgatacagca |
209 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||||| |||||||||||||||||| | |||| ||||||| ||||||| |||||||| | |
|
|
| T |
27574711 |
aaagtgacttcccaaacatcaaacttgccctatccacctatcatgatgtgcatcaagaacaacaaggagttcttgggtgtcttcaagagttgatacaacg |
27574810 |
T |
|
| Q |
210 |
tcgaacaaatgtgaatggtaagcatgaggaacttaaccaaagaaaaca |
257 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||| ||||| |||||||| |
|
|
| T |
27574811 |
tcgaacagatgtgaatgacaagcacgaggaactcaaccagagaaaaca |
27574858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University