View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6480_high_14 (Length: 251)
Name: NF6480_high_14
Description: NF6480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6480_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 25584562 - 25584322
Alignment:
| Q |
1 |
caaattgtgatagtgtataacaattgaatcacctgtaatggagtgataccaccagcgatgtcccagtcatttttatagtcaggaacaatgtacttaggca |
100 |
Q |
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| T |
25584562 |
caaattgtgatagtgtgtaacaattgaatcacctgtaatggcgtgacaccaccagcgatgtcccagtcatttttatagtcaggaacaatgtacttaggca |
25584463 |
T |
|
| Q |
101 |
ctgcaccggataataccatggcagatatagctgataaatgacaatttcgaggaagaataagaaattctcctggtgaacaggttgccattattgctgcctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25584462 |
ctgcaccggataataccatggcagatatagctgataaatgacaatttcgaggaagaataagaaattctcctggtgaacaggttgccattattgctgcctg |
25584363 |
T |
|
| Q |
201 |
gatcccacaagtagtacctccaacaagaaaccatgtctctg |
241 |
Q |
| |
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| T |
25584362 |
aatcccacaagtagtacctccgacaagaaaccatgtctctg |
25584322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 25589379 - 25589163
Alignment:
| Q |
25 |
tgaatcacctgtaatggagtgataccaccagcgatgtcccagtcatttttatagtcaggaacaatgtacttaggcactgcaccggataataccatggcag |
124 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||| |
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| T |
25589379 |
tgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccatggcag |
25589280 |
T |
|
| Q |
125 |
atatagctgataaatgacaatttcgaggaagaataagaaattctcctggtgaacaggttgccattattgctgcctggatcccacaagtagtacctccaac |
224 |
Q |
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| T |
25589279 |
atatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtaccgttgac |
25589180 |
T |
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| Q |
225 |
aagaaaccatgtctctg |
241 |
Q |
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| T |
25589179 |
aagaaaccatgtctctg |
25589163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 25599031 - 25598815
Alignment:
| Q |
25 |
tgaatcacctgtaatggagtgataccaccagcgatgtcccagtcatttttatagtcaggaacaatgtacttaggcactgcaccggataataccatggcag |
124 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||| |
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| T |
25599031 |
tgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccatggcag |
25598932 |
T |
|
| Q |
125 |
atatagctgataaatgacaatttcgaggaagaataagaaattctcctggtgaacaggttgccattattgctgcctggatcccacaagtagtacctccaac |
224 |
Q |
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||||||||||||||||| |||| | ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
25598931 |
atatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtaccgttgac |
25598832 |
T |
|
| Q |
225 |
aagaaaccatgtctctg |
241 |
Q |
| |
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||||||||||||||||| |
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| T |
25598831 |
aagaaaccatgtctctg |
25598815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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