View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6480_high_17 (Length: 202)
Name: NF6480_high_17
Description: NF6480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6480_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 38001117 - 38000932
Alignment:
| Q |
1 |
tgacatcttatcatggcaagaactagttggtgcaggccccattcgaattgcagaaggtgaagtttggtgattgttacaatttaccaaatgaattacctca |
100 |
Q |
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| T |
38001117 |
tgacatcttatcatggcaagaactagttggttcaggccccattcgaattgcagaaggtgaagtttggtgattgttacaatttaccaaatgaattacctca |
38001018 |
T |
|
| Q |
101 |
gttggaataccaaatataatttttgagatgaatcgtaaacatgtagttggtgatggcgcagctaaaacagttacaccataaaatgg |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38001017 |
gttggaataccaaatataatttttgagatgaatcgtaaacatgtagttggtgatggcgcagctaaaacagttagaccataaaatgg |
38000932 |
T |
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