View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6480_high_2 (Length: 645)
Name: NF6480_high_2
Description: NF6480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6480_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 19 - 635
Target Start/End: Original strand, 52495538 - 52496153
Alignment:
| Q |
19 |
acttccactaccatttgaagatgagttgaaactgcaattcatcacagttctgcactttctcatatttacatggcaagaaagggaattaggcttgattttg |
118 |
Q |
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| T |
52495538 |
acttccactaccatttgaagatgagttgaaactgcaattcatcacagttctgcactttctcatatttacatggcaagaaagggaattaggcttgattttg |
52495637 |
T |
|
| Q |
119 |
ttactagcactgaatccccacaattcaattctactacaaccagcgttgattggtccaatcataggcatagcaacactgcacatagctgatcctttcacac |
218 |
Q |
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| T |
52495638 |
ttactagcactgaatccccacaattcaattctactacagccagcgttgattggtccaatcataggcatagcaacactgcacatagctgatcctttcacac |
52495737 |
T |
|
| Q |
219 |
aaaccattttatccattcaaacctacacaatttgaaattagttattaaaccaatgtttcgaacataaaaattgaattaattaagaattaaaaccgtacct |
318 |
Q |
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| T |
52495738 |
aaaccattttatccattcaaacctacacaatttgaaattagttattaaaccaatgtttcgaacataaaaattgaattaattaagaattaaaaccgcacct |
52495837 |
T |
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| Q |
319 |
agtaagatgaatcaccggtctcgttttaataaaatttaactattggtacataataataagaatggatagtgtcgaagttgaaatagagaaaattaagatc |
418 |
Q |
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| T |
52495838 |
agtaagatgaatcaccgatctcgttttaataaaatttaactattggtacataataataagaatggatagtgttgaagttgaaatagagaaaattaagatc |
52495937 |
T |
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| Q |
419 |
tgaaaatgaagagaggaaaggagggaatgagaaagaggataagagattctttctttgtttgtgtaaagctaactaaaataataaatagaacgaactagaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52495938 |
tgaaaatgaagagaggaaaggagggaatgagaaagaggataagagattctttctttgtttgtgtaaagctaact-aaataataaatagaacgaactagaa |
52496036 |
T |
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| Q |
519 |
gtgttatcaaagatannnnnnnaaagtttaggaaagtatcaaccgttcttccaccgcaagcatcatcttcaattagatagatagaccataaaatgaaatc |
618 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52496037 |
gtgttatcaaagatatttttttaaagtttaggaaagtatcaaccgttcttccaccgcaagcatcatcttcaattagatagatagaccataaaatgaaatc |
52496136 |
T |
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| Q |
619 |
actcttttacccctatg |
635 |
Q |
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| T |
52496137 |
actcttttacccctatg |
52496153 |
T |
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