View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6480_high_3 (Length: 612)
Name: NF6480_high_3
Description: NF6480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6480_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 560; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 17 - 596
Target Start/End: Original strand, 23597051 - 23597630
Alignment:
| Q |
17 |
catcaaccctgatgaggctgttgcttatggcgctgcagaccaagctgctattttgagcggcgaaggcaatgagaaagtacaggatcttttgttgctggat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23597051 |
catcaaccctgatgaggctgttgcttatggcgctgcagtccaagctgctattttgagcggcgaaggcaatgagaaagtacaggatcttttgttgctggat |
23597150 |
T |
|
| Q |
117 |
gttactcctctttcccttggtttggagactgcaggaggagtcatgactgtgttaattccgagaaacacaacaattcctaccaagaaggagcaggtgtttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23597151 |
gttactcctctttcccttggtttggagactgcaggaggagtcatgactgtgttaattccgagaaacacaacaattcctaccaagaaggagcaggtgtttt |
23597250 |
T |
|
| Q |
217 |
cgacctattctgataaccaacctggtgtgctgattcaggtctacgaaggagaaagaacaaggactcgtgataacaatttgttgggcaagtttgagttgtc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23597251 |
cgacctattctgataaccaacctggtgtgctgattcaggtctacgaaggagaaagaacaaggactcgtgataacaatttgttgggcaagtttgagctgtc |
23597350 |
T |
|
| Q |
317 |
gggtattcctcctgctccaaggggtgttcctcagatcactgtctgctttgacatcgatgccaatggcattttgaatgtctcagcagaggacaagacaaca |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23597351 |
gggtattcctcctgctccaaggggtgttcctcagatcactgtctgctttgacatcgatgccaatggcattttgaatgtctcagcagaggacaagacaacc |
23597450 |
T |
|
| Q |
417 |
gggcagaaaaacaagattacaattaccaatgacaagggtaggctctccaaggaggacattgagaaaatggtgcaggaagcggaaaagtacaaatccgagg |
516 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23597451 |
gggcaaaaaaacaagattacaattaccaatgacaagggtaggctctccaaggaggacattgagaaaatggtgcaggaagcggaaaagtacaaatccgagg |
23597550 |
T |
|
| Q |
517 |
atgaggagcacaaaaagaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagac |
596 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23597551 |
atgaggagcacaaaaggaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagac |
23597630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 596
Target Start/End: Original strand, 23588199 - 23588778
Alignment:
| Q |
17 |
catcaaccctgatgaggctgttgcttatggcgctgcagaccaagctgctattttgagcggcgaaggcaatgagaaagtacaggatcttttgttgctggat |
116 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| || || | |||||||||||||||||| || || |||||||||||||| |||||||| |||||||||||| |
|
|
| T |
23588199 |
catcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtggtgagggcaatgagaaagtgcaggatctgttgttgctggat |
23588298 |
T |
|
| Q |
117 |
gttactcctctttcccttggtttggagactgcaggaggagtcatgactgtgttaattccgagaaacacaacaattcctaccaagaaggagcaggtgtttt |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
23588299 |
gttactcctctctcccttggtttggagaccgcaggaggtgtcatgactgtattgattcctagaaacacaaccattcctaccaagaaggagcaagtgtttt |
23588398 |
T |
|
| Q |
217 |
cgacctattctgataaccaacctggtgtgctgattcaggtctacgaaggagaaagaacaaggactcgtgataacaatttgttgggcaagtttgagttgtc |
316 |
Q |
| |
|
| ||||| |||||||| |||||||||||| ||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23588399 |
caacctactctgataatcaacctggtgtgttgattcaagtctatgaaggcgaaagaacaaggactcgtgataacaatttgttgggcaagtttgagttgtc |
23588498 |
T |
|
| Q |
317 |
gggtattcctcctgctccaaggggtgttcctcagatcactgtctgctttgacatcgatgccaatggcattttgaatgtctcagcagaggacaagacaaca |
416 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23588499 |
gggtatccctcctgctccaaggggtgttcctcagatcactgtctgctttgacattgatgccaatggcattttgaatgtctcagcagaggacaagacaaca |
23588598 |
T |
|
| Q |
417 |
gggcagaaaaacaagattacaattaccaatgacaagggtaggctctccaaggaggacattgagaaaatggtgcaggaagcggaaaagtacaaatccgagg |
516 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||| || |||| |
|
|
| T |
23588599 |
gggcagaaaaacaagattacaatcaccaatgacaagggtaggctctccaaggaagaaattgagaagatggtgcaggaagctgaaaagtacaagtctgagg |
23588698 |
T |
|
| Q |
517 |
atgaggagcacaaaaagaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagac |
596 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23588699 |
acgaggagcacaaaaagaaagtggaggccaagaatgcacttgagaactatgcctacaacatgaggaacacaatcaaagac |
23588778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 54396121 - 54395889
Alignment:
| Q |
21 |
aaccctgatgaggctgttgcttatggcgctgcagaccaagctgctattttgagcggcgaaggcaatgagaaagtacaggatcttttgttgctggatgtta |
120 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| | ||||| || ||||||||||| ||||| |||| || || || |||||| ||||||| ||||||| |
|
|
| T |
54396121 |
aaccctgatgaagctgttgcttatggtgctgctgttcaagcagcgattttgagcggtgaaggtgatgaaaaggttcaagatcttctgttgcttgatgtta |
54396022 |
T |
|
| Q |
121 |
ctcctctttcccttggtttggagactgcaggaggagtcatgactgtgttaattccgagaaacacaacaattcctaccaagaaggagcaggtgttttcgac |
220 |
Q |
| |
|
|||||||| | || ||||| ||||| || || || ||||| || ||||| || ||||| || |||||||| |||||||||||| | || || || |
|
|
| T |
54396021 |
ctcctcttagtttggggttggaaactgctggtggtgttatgacgactttgattccaaggaacacgacgattcctacgaagaaggagcagattttctcaac |
54395922 |
T |
|
| Q |
221 |
ctattctgataaccaacctggtgtgctgattca |
253 |
Q |
| |
|
|| || ||||||||||||||||| ||||||| |
|
|
| T |
54395921 |
ttactcagataaccaacctggtgttttgattca |
54395889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 9336358 - 9336413
Alignment:
| Q |
18 |
atcaaccctgatgaggctgttgcttatggcgctgcagaccaagctgctattttgag |
73 |
Q |
| |
|
|||||||| |||||||||||||||||||| || || | ||||||||||||||||| |
|
|
| T |
9336358 |
atcaacccagatgaggctgttgcttatggtgcagctgttcaagctgctattttgag |
9336413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 54395824 - 54395751
Alignment:
| Q |
318 |
ggtattcctcctgctccaaggggtgttcctcagatcactgtctgctttgacatcgatgccaatggcattttgaa |
391 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||| ||| || || ||||| ||||| ||||| || ||||| |
|
|
| T |
54395824 |
ggtattcctcctgctccaagaggtgtaccacagatcaatgtttgtttcgacattgatgcgaatggtatattgaa |
54395751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 3e-77; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 24 - 586
Target Start/End: Complemental strand, 39985341 - 39984779
Alignment:
| Q |
24 |
cctgatgaggctgttgcttatggcgctgcagaccaagctgctattttgagcggcgaaggcaatgagaaagtacaggatcttttgttgctggatgttactc |
123 |
Q |
| |
|
||||||||||||||||| ||||| ||||| | || |||||||| ||||| || || ||||||||||| || ||||||||| | | ||||||| || | |
|
|
| T |
39985341 |
cctgatgaggctgttgcatatggtgctgctgttcaggctgctatcttgagtggtgagggcaatgagaaggttcaggatcttctccttttggatgtcaccc |
39985242 |
T |
|
| Q |
124 |
ctctttcccttggtttggagactgcaggaggagtcatgactgtgttaattccgagaaacacaacaattcctaccaagaaggagcaggtgttttcgaccta |
223 |
Q |
| |
|
|||| || ||||||||||||||||| || || || ||||||||| | || || || || || || ||||| || ||||| || ||||| || || || || |
|
|
| T |
39985241 |
ctctatctcttggtttggagactgctggtggtgtgatgactgtgcttatcccaaggaataccactattccaacaaagaaagaacaggttttctctacata |
39985142 |
T |
|
| Q |
224 |
ttctgataaccaacctggtgtgctgattcaggtctacgaaggagaaagaacaaggactcgtgataacaatttgttgggcaagtttgagttgtcgggtatt |
323 |
Q |
| |
|
|||||| ||||| ||||| ||| |||| || || | |||||||| || ||||| || | || ||||||||||||||||||||||| | || || ||| |
|
|
| T |
39985141 |
ttctgacaaccagcctggcgtgttgatccaagtttttgaaggagagaggacaagaacaagagacaacaatttgttgggcaagtttgaactttccggcatt |
39985042 |
T |
|
| Q |
324 |
cctcctgctccaaggggtgttcctcagatcactgtctgctttgacatcgatgccaatggcattttgaatgtctcagcagaggacaagacaacagggcaga |
423 |
Q |
| |
|
|||||||| || || |||||||| || |||||||| ||||||||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| || |||| |
|
|
| T |
39985041 |
cctcctgcccccagaggtgttccccaaatcactgtgtgctttgacattgatgccaatggtatcttgaatgtctctgcagaagacaaaacaactggccaga |
39984942 |
T |
|
| Q |
424 |
aaaacaagattacaattaccaatgacaagggtaggctctccaaggaggacattgagaaaatggtgcaggaagcggaaaagtacaaatccgaggatgagga |
523 |
Q |
| |
|
| ||||| || || || ||||||||||||||||| || || ||||| ||||||||||| ||||| || || || || |||||||| || || ||||| || |
|
|
| T |
39984941 |
agaacaaaatcaccatcaccaatgacaagggtagactttcaaaggaagacattgagaagatggttcaagaggcagagaagtacaagtcggaagatgaaga |
39984842 |
T |
|
| Q |
524 |
gcacaaaaagaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacac |
586 |
Q |
| |
|
||| || |||||||| |||||||| ||||| | || |||||||| ||||||||||||||||| |
|
|
| T |
39984841 |
gcataagaagaaggtcgaggccaagaatgcattggaaaactatgcatacaacatgaggaacac |
39984779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 17 - 596
Target Start/End: Complemental strand, 8102369 - 8101790
Alignment:
| Q |
17 |
catcaaccctgatgaggctgttgcttatggcgctgcagaccaagctgctattttgagcggcgaaggcaatgagaaagtacaggatcttttgttgctggat |
116 |
Q |
| |
|
||||||||| || ||||||||||||||||| || || | ||||||||||| ||||| || ||||| |||||||| || || ||| | ||| | ||||| |
|
|
| T |
8102369 |
catcaaccccgacgaggctgttgcttatggtgccgctgttcaagctgctatcttgagtggtgaaggaaatgagaaggttcaagatttgttgcttttggat |
8102270 |
T |
|
| Q |
117 |
gttactcctctttcccttggtttggagactgcaggaggagtcatgactgtgttaattccgagaaacacaacaattcctaccaagaaggagcaggtgtttt |
216 |
Q |
| |
|
|| || || | || | |||||||||||||||||||| ||||||||||| || ||||| || ||||| || ||||| |||||||||||||| || || | |
|
|
| T |
8102269 |
gtcaccccattgtctcaaggtttggagactgcaggaggtgtcatgactgtattgattccaaggaacactaccattccaaccaagaaggagcaagttttct |
8102170 |
T |
|
| Q |
217 |
cgacctattctgataaccaacctggtgtgctgattcaggtctacgaaggagaaagaacaaggactcgtgataacaatttgttgggcaagtttgagttgtc |
316 |
Q |
| |
|
| || ||||| || |||||||||||||| |||| || || || ||||| || ||||| || || |||||||| |||||||| ||||||||| | || |
|
|
| T |
8102169 |
ctacgtattcagacaaccaacctggtgttttgatccaagtttatgaaggtgagagaaccagaaccaaggataacaacttgttgggtaagtttgagctttc |
8102070 |
T |
|
| Q |
317 |
gggtattcctcctgctccaaggggtgttcctcagatcactgtctgctttgacatcgatgccaatggcattttgaatgtctcagcagaggacaagacaaca |
416 |
Q |
| |
|
|| |||||||| || || | |||||||||||||||||||| || ||||| || ||||||||||| || ||||||||||| || |||||||| ||||| |
|
|
| T |
8102069 |
cggaattcctccagcaccccgcggtgttcctcagatcactgtttgttttgatattgatgccaatggtatcttgaatgtctctgctgaggacaaaacaacc |
8101970 |
T |
|
| Q |
417 |
gggcagaaaaacaagattacaattaccaatgacaagggtaggctctccaaggaggacattgagaaaatggtgcaggaagcggaaaagtacaaatccgagg |
516 |
Q |
| |
|
|||||||| ||||||||||| || ||||| || ||||| ||| | || ||||| || || ||||| ||||| || ||||| || || ||||| || | |
|
|
| T |
8101969 |
gggcagaagaacaagattaccatcaccaacgataagggaaggttgtcaaaggaagaaatcgagaagatggtccaagaagcagagaaatacaagagtgaag |
8101870 |
T |
|
| Q |
517 |
atgaggagcacaaaaagaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagac |
596 |
Q |
| |
|
||||||||||||| |||||||| ||||| || || | | ||||||||||| ||||||||||| ||||| || |||||| |
|
|
| T |
8101869 |
atgaggagcacaagaagaaggttgaggcaaagaactccttggagaactatgcatacaacatgagaaacaccattaaagac |
8101790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 18 - 596
Target Start/End: Original strand, 8017880 - 8018458
Alignment:
| Q |
18 |
atcaaccctgatgaggctgttgcttatggcgctgcagaccaagctgctattttgagcggcgaaggcaatgagaaagtacaggatcttttgttgctggatg |
117 |
Q |
| |
|
|||||||| || ||||||||||||||||| || || | ||||| || |||||||| || ||||||||||| || || || ||| | || | |||||| |
|
|
| T |
8017880 |
atcaacccagacgaggctgttgcttatggtgccgctgtacaagcagcaattttgagtggtgaaggcaatgaaaaggttcaagatttgctgcttttggatg |
8017979 |
T |
|
| Q |
118 |
ttactcctctttcccttggtttggagactgcaggaggagtcatgactgtgttaattccgagaaacacaacaattcctaccaagaaggagcaggtgttttc |
217 |
Q |
| |
|
| ||||| | || || ||| | || ||||| || || ||||||||||| |||||||| || ||||| |||||||| |||||||||||||| || || || |
|
|
| T |
8017980 |
tcactccattgtctctgggtctagaaactgctggtggtgtcatgactgtattaattccaaggaacaccacaattccaaccaagaaggagcaagttttctc |
8018079 |
T |
|
| Q |
218 |
gacctattctgataaccaacctggtgtgctgattcaggtctacgaaggagaaagaacaaggactcgtgataacaatttgttgggcaagtttgagttgtcg |
317 |
Q |
| |
|
|| || || |||||||||||||||||| |||| || || || ||||| || ||| |||| || | || ||||| |||||||| || || ||| | || |
|
|
| T |
8018080 |
tacttactcagataaccaacctggtgtgttgatccaagtttatgaaggtgagagagcaagaaccagagacaacaacttgttgggaaaattcgagctttct |
8018179 |
T |
|
| Q |
318 |
ggtattcctcctgctccaaggggtgttcctcagatcactgtctgctttgacatcgatgccaatggcattttgaatgtctcagcagaggacaagacaacag |
417 |
Q |
| |
|
|| |||||||| || || | ||||||||||| ||||| || ||||| ||||| ||||||||||| || ||||||||||| || |||||||| ||||| | |
|
|
| T |
8018180 |
ggcattcctccagcaccccgtggtgttcctcaaatcacagtttgcttcgacattgatgccaatggtatcttgaatgtctctgctgaggacaaaacaactg |
8018279 |
T |
|
| Q |
418 |
ggcagaaaaacaagattacaattaccaatgacaagggtaggctctccaaggaggacattgagaaaatggtgcaggaagcggaaaagtacaaatccgagga |
517 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| |||||| | || ||||| || |||||||| ||||| ||||||| ||||| ||||| | || || |
|
|
| T |
8018280 |
ggcagaagaacaagattaccatcaccaatgacaaaggtaggttgtctaaggaagaaattgagaagatggttgaggaagcagaaaaatacaaggctgaaga |
8018379 |
T |
|
| Q |
518 |
tgaggagcacaaaaagaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagac |
596 |
Q |
| |
|
||||| |||||||||||||| || || || ||||| | || ||||| || |||||||||||||||||||| |||||| |
|
|
| T |
8018380 |
cgaggaacacaaaaagaaggttgatgcaaagaatgctttggaaaactacgcttacaacatgaggaacacaattaaagac |
8018458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 8576028 - 8575980
Alignment:
| Q |
17 |
catcaaccctgatgaggctgttgcttatggcgctgcagaccaagctgct |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | |||||||||| |
|
|
| T |
8576028 |
catcaaccctgatgaggctgttgcttatggtgctgttgtccaagctgct |
8575980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 8537738 - 8537679
Alignment:
| Q |
17 |
catcaaccctgatgaggctgttgcttatggcgctgcagaccaagctgctattttgagcgg |
76 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| | ||| |||||| | |||||||| |
|
|
| T |
8537738 |
catcaaccctgatgaagctgttgcttatggtgctgctgtccaggctgctttgttgagcgg |
8537679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 8581402 - 8581367
Alignment:
| Q |
17 |
catcaaccctgatgaggctgttgcttatggcgctgc |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8581402 |
catcaaccctgatgaggctgttgcttatggtgctgc |
8581367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 17259943 - 17259908
Alignment:
| Q |
17 |
catcaaccctgatgaggctgttgcttatggcgctgc |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17259943 |
catcaaccctgatgaggctgttgcttatggtgctgc |
17259908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 17267640 - 17267606
Alignment:
| Q |
18 |
atcaaccctgatgaggctgttgcttatggcgctgc |
52 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17267640 |
atcaaccctgatgaggctgttgcttatggtgctgc |
17267606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 29582307 - 29582336
Alignment:
| Q |
17 |
catcaaccctgatgaggctgttgcttatgg |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
29582307 |
catcaaccctgatgaggctgttgcttatgg |
29582336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 8609619 - 8609571
Alignment:
| Q |
17 |
catcaaccctgatgaggctgttgcttatggcgctgcagaccaagctgct |
65 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| | ||| |||||| |
|
|
| T |
8609619 |
catcaaccctgatgaggcggttgcttatggtgctgctgtccaggctgct |
8609571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 396
Target Start/End: Original strand, 17648662 - 17648773
Alignment:
| Q |
285 |
gataacaatttgttgggcaagtttgagttgtcgggtattcctcctgctccaaggggtgttcctcagatcactgtctgctttgacatcgatgccaatggca |
384 |
Q |
| |
|
||||||||||||||||| || ||| | | || || || ||||||||||| || |||||||| ||||||| ||| ||||||||||| ||||| ||||| | |
|
|
| T |
17648662 |
gataacaatttgttgggaaaatttcaactttccggcatccctcctgctcctagaggtgttccacagatcagtgtatgctttgacattgatgctaatggta |
17648761 |
T |
|
| Q |
385 |
ttttgaatgtct |
396 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
17648762 |
tattggatgtct |
17648773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 396
Target Start/End: Original strand, 17706409 - 17706520
Alignment:
| Q |
285 |
gataacaatttgttgggcaagtttgagttgtcgggtattcctcctgctccaaggggtgttcctcagatcactgtctgctttgacatcgatgccaatggca |
384 |
Q |
| |
|
||||||||||||||||| || ||| | | || || || ||||||||||| |||||||||| ||||||| ||| ||||||||||| ||| | ||||| | |
|
|
| T |
17706409 |
gataacaatttgttgggaaaatttcaactttccggcatccctcctgctccttggggtgttccacagatcattgtatgctttgacattgatcctaatggta |
17706508 |
T |
|
| Q |
385 |
ttttgaatgtct |
396 |
Q |
| |
|
| |||||||||| |
|
|
| T |
17706509 |
tattgaatgtct |
17706520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 43625110 - 43625058
Alignment:
| Q |
21 |
aaccctgatgaggctgttgcttatggcgctgcagaccaagctgctattttgag |
73 |
Q |
| |
|
|||||||||||||||||||||||||| || || | ||| |||||||||||||| |
|
|
| T |
43625110 |
aaccctgatgaggctgttgcttatggtgcagctgtccaggctgctattttgag |
43625058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 16662458 - 16662487
Alignment:
| Q |
17 |
catcaaccctgatgaggctgttgcttatgg |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
16662458 |
catcaaccctgatgaggctgttgcttatgg |
16662487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 4679024 - 4679081
Alignment:
| Q |
18 |
atcaaccctgatgaggctgttgcttatggcgctgcagaccaagctgctattttgagcg |
75 |
Q |
| |
|
|||||||| |||||||||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
4679024 |
atcaacccagatgaggctgttgcttatggtgcagctatccaagctgctattttgagcg |
4679081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 15594736 - 15594707
Alignment:
| Q |
17 |
catcaaccctgatgaggctgttgcttatgg |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15594736 |
catcaaccctgatgaggctgttgcttatgg |
15594707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 12528206 - 12528177
Alignment:
| Q |
17 |
catcaaccctgatgaggctgttgcttatgg |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12528206 |
catcaaccctgatgaggctgttgcttatgg |
12528177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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