View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6480_high_6 (Length: 402)

Name: NF6480_high_6
Description: NF6480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6480_high_6
NF6480_high_6
[»] chr2 (1 HSPs)
chr2 (16-391)||(26329296-26329683)
[»] chr1 (1 HSPs)
chr1 (28-364)||(18124768-18125116)
[»] chr7 (12 HSPs)
chr7 (338-391)||(35951530-35951583)
chr7 (24-164)||(36218271-36218411)
chr7 (263-389)||(32726601-32726727)
chr7 (332-386)||(35945819-35945873)
chr7 (318-391)||(35981032-35981105)
chr7 (318-391)||(36002444-36002517)
chr7 (199-284)||(36223666-36223751)
chr7 (24-99)||(35957325-35957400)
chr7 (196-290)||(36218455-36218549)
chr7 (127-164)||(35933796-35933833)
chr7 (28-97)||(35976782-35976851)
chr7 (28-97)||(35998194-35998263)


Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 26329296 - 26329683
Alignment:
Q  16 caatcaccaaatggaagtcaaaagctagaaaacattgcaagagattatatagatgagttacattcaagatcatttcttcaggattttgaagactttggcc 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26329296 caatcaccaaatggaagtcaaaagctagagaacattgcaagagattatatagatgagttacattcaagatcatttcttcaggattttgaagactttggcc 26329395  T
Q  116 agacatgtgttttcaaagtacatgatttggtgcacgatcttgcaatgta----------gacgcatttgtggtggtaaactcctatactcaa--tatacc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||  ||||||    
T  26329396 agacatgtgttttcaaagtacatgatttggtgcacgatcttgcaatgtatgtagcaaaagacgcatttgtggtggtaaactcctatactcaaaatatacc 26329495  T
Q  204 tgagcaagcaagacatttatcaattgttgaaaatgactcacttggtcatgctttgttttccaagtcggaaagtgtgagaactattttgtgtcccatccaa 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26329496 tgagcaagcaagacatttatcaattgttgaaaatgactcacttggtcatgctttgttttccaagtcgaaaagtgtgagaactattttgtgtcccatccaa 26329595  T
Q  304 ggagtaggtgtcgatagtgaaactctcttggattcatggatatcaagatacaaatacttgcactatttagatttaagtgattcttcat 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26329596 ggagtaggtgtcgatagtgaaactctcttggattcatggatatcaagatacaaatacttgcgctatttagatttaagtgattcttcat 26329683  T

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Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 28 - 364
Target Start/End: Complemental strand, 18125116 - 18124768
Alignment:
Q  28 ggaagtcaaaagctagaaaacattgcaagagattatatagatgagttacattcaagatcatttcttcaggattttgaagactttggccagacatgtgttt 127  Q
    |||||| |||| |||||  | ||||||||||| ||||| ||||||||| ||||| | ||||||||||||||||| ||||||  ||||  ||  ||||| |    
T  18125116 ggaagtgaaaaactagaggatattgcaagagaatatattgatgagttaaattcacgttcatttcttcaggatttcgaagacaatggctggatttgtgtat 18125017  T
Q  128 tcaaagtacatgatttggtgcacgatcttgcaatgta----------gacgcatttgtggtggtaaactcctatactcaa--tatacctgagcaagcaag 215  Q
    ||||||||||||||||||| || |||||| || ||||          |  |  ||| | |||||| ||||  ||| ||||  ||||||||||||||   |    
T  18125016 tcaaagtacatgatttggtacatgatctttcattgtatgttgctaaagcggagtttctagtggtagactcacatattcaaaatatacctgagcaagtgcg 18124917  T
Q  216 acatttatcaattgttgaaaatgactcacttggtcatgctttgttttccaagtcggaaagtgtgagaactattttgtgtcccatccaaggagtaggtgtc 315  Q
    |||||||||||||||||||||||| |||||||| ||| |||| ||  |||||||   || |||||||| ||| |||| ||| ||  | ||||| ||| |     
T  18124916 acatttatcaattgttgaaaatgattcacttggccatactttattccccaagtcaagaaatgtgagaagtatattgtttcctattgatggagtgggtctt 18124817  T
Q  316 gatagtgaaactctcttggattcatggatatcaagatacaaatacttgc 364  Q
    ||||||||| |||| ||| ||  |||||||||||||||||||| |||||    
T  18124816 gatagtgaatctcttttgtataaatggatatcaagatacaaattcttgc 18124768  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 35951583 - 35951530
Alignment:
Q  338 catggatatcaagatacaaatacttgcactatttagatttaagtgattcttcat 391  Q
    ||||| |||||||||| |||||||||| ||||||||||||||||||||||||||    
T  35951583 catgggtatcaagatataaatacttgcgctatttagatttaagtgattcttcat 35951530  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 36218271 - 36218411
Alignment:
Q  24 aaatggaagtcaaaagctagaaaacattgcaagagattatatagatgagttacattcaagatcatttcttcaggattttgaagactttggccagacatgt 123  Q
    |||||||||| ||||||||||  | ||||| ||||| ||| || |||||||||||||| ||||||| |||||||||||  | ||||||||  | |  |||    
T  36218271 aaatggaagtgaaaagctagagcatattgccagagaatatgtacatgagttacattcacgatcattgcttcaggatttcaaggactttgggtacatttgt 36218370  T
Q  124 gttttcaaagtacatgatttggtgcacgatcttgcaatgta 164  Q
    |  |||| ||| ||||||||| | || ||||||||||||||    
T  36218371 gagttcagagtgcatgatttgatacatgatcttgcaatgta 36218411  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 389
Target Start/End: Complemental strand, 32726727 - 32726601
Alignment:
Q  263 ccaagtcggaaagtgtgagaactattttgtgtcccatccaaggagtaggtgtcgatagtgaaactctcttggattcatggatatcaagatacaaatactt 362  Q
    |||||||  ||||| ||||||||||||| | ||||||  ||||||| ||  | |||||| ||||| |  || |  |||||||||||||||||||||||||    
T  32726727 ccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggccttgatagtcaaactttgctgaacacatggatatcaagatacaaatactt 32726628  T
Q  363 gcactatttagatttaagtgattcttc 389  Q
    ||  ||||||| |||||| ||||||||    
T  32726627 gcgatatttaggtttaagagattcttc 32726601  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 386
Target Start/End: Complemental strand, 35945873 - 35945819
Alignment:
Q  332 tggattcatggatatcaagatacaaatacttgcactatttagatttaagtgattc 386  Q
    ||||| ||||| |||||||||||||||||||||  | ||||||||||||||||||    
T  35945873 tggatacatggttatcaagatacaaatacttgcgttttttagatttaagtgattc 35945819  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 35981105 - 35981032
Alignment:
Q  318 tagtgaaactctcttggattcatggatatcaagatacaaatacttgcactatttagatttaagtgattcttcat 391  Q
    ||||||||||||  | |||  ||||||||||||||||||||||||    ||||||||||||||| |||||||||    
T  35981105 tagtgaaactctgctagatatatggatatcaagatacaaatacttaagatatttagatttaagtaattcttcat 35981032  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 36002517 - 36002444
Alignment:
Q  318 tagtgaaactctcttggattcatggatatcaagatacaaatacttgcactatttagatttaagtgattcttcat 391  Q
    ||||||||||||  | |||  ||||||||||||||||||||||||    ||||||||||||||| |||||||||    
T  36002517 tagtgaaactctgctagatatatggatatcaagatacaaatacttaagatatttagatttaagtaattcttcat 36002444  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 284
Target Start/End: Original strand, 36223666 - 36223751
Alignment:
Q  199 atacctgagcaagcaagacatttatcaattgttgaaaatgactcacttggtcatgctttgttttccaagtcggaaagtgtgagaac 284  Q
    ||||| || |||||||| ||| ||||||||||||||||||  |||||||| |||| ||||||  |||||||  ||||||| |||||    
T  36223666 ataccggaacaagcaaggcatatatcaattgttgaaaatggttcacttggccatgatttgttccccaagtccaaaagtgtaagaac 36223751  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 35957400 - 35957325
Alignment:
Q  24 aaatggaagtcaaaagctagaaaacattgcaagagattatatagatgagttacattcaagatcatttcttcaggat 99  Q
    |||||||||| ||||||| ||||  ||||||||  | ||||| |||||| | ||||||||||||||| ||||||||    
T  35957400 aaatggaagtgaaaagctggaaagtattgcaaggaaatatattgatgagatgcattcaagatcatttattcaggat 35957325  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 290
Target Start/End: Original strand, 36218455 - 36218549
Alignment:
Q  196 aatatacctgagcaagcaagacatttatcaattgttgaaaatgactcacttggtcatgctttgttttccaagtcggaaagtgtgagaactatttt 290  Q
    |||||| |||| |||||||  |||||||||||||||||||| || || ||||   | | ||||||| |||||||  ||||||| |||||||||||    
T  36218455 aatatatctgaacaagcaaagcatttatcaattgttgaaaaggattctcttgacaaagttttgtttcccaagtccaaaagtgtaagaactatttt 36218549  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 35933833 - 35933796
Alignment:
Q  127 ttcaaagtacatgatttggtgcacgatcttgcaatgta 164  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  35933833 ttcaaagttcatgatttggtgcacgatcttgcattgta 35933796  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 35976851 - 35976782
Alignment:
Q  28 ggaagtcaaaagctagaaaacattgcaagagattatatagatgagttacattcaagatcatttcttcagg 97  Q
    |||||| ||||||| || |  ||||||||| | ||||| |||||||| ||||||||||||||| ||||||    
T  35976851 ggaagtgaaaagctggagagtattgcaagaaaatatattgatgagttgcattcaagatcatttattcagg 35976782  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 35998263 - 35998194
Alignment:
Q  28 ggaagtcaaaagctagaaaacattgcaagagattatatagatgagttacattcaagatcatttcttcagg 97  Q
    |||||| ||||||| || |  ||||||||| | ||||| |||||||| ||||||||||||||| ||||||    
T  35998263 ggaagtgaaaagctggagagtattgcaagaaaatatattgatgagttgcattcaagatcatttattcagg 35998194  T

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