View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6480_high_8 (Length: 317)
Name: NF6480_high_8
Description: NF6480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6480_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 42635211 - 42634913
Alignment:
| Q |
1 |
accatcatcttttgaagttgcagatgataaaagttgaggactattgtttgcggtgcaaaacgagttctcttcaacttcgttaagttttagtgggttgtaa |
100 |
Q |
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| T |
42635211 |
accatcatcttttgaagttgcagatgataaaagttgaggactattgtttgcggtgcaaaacgagttctcttcaacttcgttaagttttagtgggttgtaa |
42635112 |
T |
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| Q |
101 |
taagattgaacctcacaagatacactttgaccaaattgatgagattttgattcctttgtaggggtcaaattctgactataataataatcaggatcacttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42635111 |
taagattgaacctcacaagatacactttgaccaaattgatgagattttgattcctttgtaggggtcaaattctgactataataataatcaggatcacttg |
42635012 |
T |
|
| Q |
201 |
tggagtgaaagatgtttctgcgttttgtgttgatgtgttgttttcccgaatcaatttcgacaatcctatcacttttttcgtcactcctgctatatgttc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42635011 |
tggagtgaaagatgtttctgcgttttgtgttgatgtgttgttttcccgaatcaatttcgacaatcctatcacttttttcgtcactcctgctatatgttc |
42634913 |
T |
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