View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6480_low_10 (Length: 289)
Name: NF6480_low_10
Description: NF6480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6480_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 24 - 271
Target Start/End: Complemental strand, 47904084 - 47903840
Alignment:
| Q |
24 |
caatttcacatgttattacaatgttgttgttattttaacattgatatataaataattgtatgtgcatgaaggaacattgttcacttcgagtgcacacata |
123 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47904084 |
caatttcacatgttattacaatgttgtt---attttaacattgatatataaataattgtatgtgcatgaaggaacatggttcacttcgagtgcacacata |
47903988 |
T |
|
| Q |
124 |
gtgacggctgtaatagggtctggagtgttgtcgctggcatgggccgttgctcagttgggatggattggagggactatcgttctcatactcttttcccttg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
47903987 |
gtgacggctgtaatagggtctggagtgttgtcgctggcatgggccgttgctcagttgggatggatcggagggactattgttctcatactcttttcccttg |
47903888 |
T |
|
| Q |
224 |
tcactctcttcacttctattctaatggctgattgctataggtatcctg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47903887 |
tcactctcttcacttctattctaatggctgattgctataggtatcctg |
47903840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 89 - 271
Target Start/End: Complemental strand, 47911120 - 47910938
Alignment:
| Q |
89 |
atgaaggaacattgttcacttcgagtgcacacatagtgacggctgtaatagggtctggagtgttgtcgctggcatgggccgttgctcagttgggatggat |
188 |
Q |
| |
|
|||||||||||| | | ||| | ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||| || ||||| ||||| |
|
|
| T |
47911120 |
atgaaggaacatgggtgactgcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatgggctgttgcacaattgggttggat |
47911021 |
T |
|
| Q |
189 |
tggagggactatcgttctcatactcttttcccttgtcactctcttcacttctattctaatggctgattgctataggtatcctg |
271 |
Q |
| |
|
|| ||||| | | |||||||||||||||| || |||||||| |||||||| || || |||||||||||||||||||||||| |
|
|
| T |
47911020 |
tgcagggagttttattctcatactcttttcactcatcactctcctcacttcttttttactggctgattgctataggtatcctg |
47910938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 75 - 271
Target Start/End: Complemental strand, 47919948 - 47919752
Alignment:
| Q |
75 |
ataattgtatgtgcatgaaggaacattgttcacttcgagtgcacacatagtgacggctgtaatagggtctggagtgttgtcgctggcatgggccgttgct |
174 |
Q |
| |
|
|||||| ||||||||||||||| ||| | | ||| ||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
47919948 |
ataattttatgtgcatgaaggatcatgggtaactgcgagtgcacacatagtgactgctgtgataggatctggagtgttgtcattggcatgggctgttgca |
47919849 |
T |
|
| Q |
175 |
cagttgggatggattggagggactatcgttctcatactcttttcccttgtcactctcttcacttctattctaatggctgattgctataggtatcctg |
271 |
Q |
| |
|
|| ||||| ||||||| |||| ||| |||||||||||||| || || |||||||| |||||||| |||| | ||||||||||| |||||||||| |
|
|
| T |
47919848 |
caattgggctggattgcagggtgtattgttctcatactcttctcactcatcactctcctcacttcttttctccttgctgattgctacaggtatcctg |
47919752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 89 - 271
Target Start/End: Complemental strand, 47925164 - 47924982
Alignment:
| Q |
89 |
atgaaggaacattgttcacttcgagtgcacacatagtgacggctgtaatagggtctggagtgttgtcgctggcatgggccgttgctcagttgggatggat |
188 |
Q |
| |
|
|||||||||||| | | ||| |||||||||||||||||||| || ||||||| |||||||||||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
47925164 |
atgaaggaacatggataactgcgagtgcacacatagtgacgactataataggatctggagtgttgtcattggcatgggctgttgctcagttgggttggat |
47925065 |
T |
|
| Q |
189 |
tggagggactatcgttctcatactcttttcccttgtcactctcttcacttctattctaatggctgattgctataggtatcctg |
271 |
Q |
| |
|
|| |||||||||| |||||| ||||||| | |||||| |||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
47925064 |
tgcagggactatcactctcatcatcttttcagccattactctcctcacttcttgtctcatggctgattgctataggtatcctg |
47924982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 42996888 - 42996991
Alignment:
| Q |
48 |
tgttgttattttaacattgatatataaataattgtatgtgcatgaaggaacattgttcacttcgagtgcacacatagtgacggctgtaatagggtctgga |
147 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| |||||||||||| ||||| | | | ||||| |||||| | || ||||||||| |||||| |
|
|
| T |
42996888 |
tgtttttattttaacattgata----aataattgtatgagcatgaaggaacgttgttaattgtgggtgcaaccatagtaatggttgtaataggatctgga |
42996983 |
T |
|
| Q |
148 |
gtgttgtc |
155 |
Q |
| |
|
|||||||| |
|
|
| T |
42996984 |
gtgttgtc |
42996991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University