View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6480_low_14 (Length: 255)
Name: NF6480_low_14
Description: NF6480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6480_low_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 26605821 - 26606058
Alignment:
| Q |
16 |
gatttgagacgttataatcatcacgttgttcgcttagggttctagnnnnnnnnncactcataggttaaagtatgtccgactagtctcctttaatttgtcc |
115 |
Q |
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| T |
26605821 |
gatttgagacattataatcatcatgttgttcgcttagggttctagaaaaaaa--cactcataggttgaagtatgtccaactagtctcctttaatttgtcc |
26605918 |
T |
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| Q |
116 |
ataaatttatcacaaacccactttagtaagaacatataaaatgaagcagaaaaacaattatcaagatattataaaaacaaaaatgttggttattaccaaa |
215 |
Q |
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| T |
26605919 |
ataaatttatcacaaacccactttagtaagaacatataaaatgaagcagaaaaacaattatcaagatattataaaaacaaaaatgttggttattaccaaa |
26606018 |
T |
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| Q |
216 |
cgcgtttcatcatagcacacaaaggaggtcgaaaaattta |
255 |
Q |
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| T |
26606019 |
ctcgtttcatcagagcaaacaaacgaggtcgaaaaattta |
26606058 |
T |
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