View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6480_low_16 (Length: 237)
Name: NF6480_low_16
Description: NF6480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6480_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 25584939 - 25585157
Alignment:
| Q |
5 |
gagttgtgtcattcccgtaaaattcctctgattgttgatgaagctcacggtgcacatctaggatttcattctgaactgcctagctcagccctccagcaag |
104 |
Q |
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| T |
25584939 |
gagttgtgtcattcccgtaaaattcctctgattgttgatgaagctcacggtgcacatctaggatttcattctgaactgcctagctcagccctccagcaag |
25585038 |
T |
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| Q |
105 |
gggctgatctaactgtacagtctactcacaaggttctttgctctcttactcagtcatctatgctgcacatgtcaggtgacattgtagataaggaaaaaat |
204 |
Q |
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| T |
25585039 |
gggctgatctaactgtacagtctactcacaaggttctttgctctcttactcagtcatctatgctgcacatgtcaggtgacattgtagataaggaaaaaat |
25585138 |
T |
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| Q |
205 |
atctaggtgtcttcaaact |
223 |
Q |
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|||||||||||| |||||| |
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| T |
25585139 |
atctaggtgtctccaaact |
25585157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 25589825 - 25590039
Alignment:
| Q |
8 |
ttgtgtcattcccgtaaaattcctctgattgttgatgaagctcacggtgcacatctaggatttcattctgaactgcctagctcagccctccagcaagggg |
107 |
Q |
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| T |
25589825 |
ttgtgtcattctcgtaaaattcctttgattgttgatgaagctcatggagcacatctaggattacattctgaactgcctagctcagccctccagcaagggg |
25589924 |
T |
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| Q |
108 |
ctgatctaactgtacagtctactcacaaggttctttgctctcttactcagtcatctatgctgcacatgtcaggtgacattgtagataaggaaaaaatatc |
207 |
Q |
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| T |
25589925 |
ctgatctaactgtacaatctactcacaaggttctttcctctcttactcaatcgtctatgctgcacatgtcgggcgacattgtagataaggaaaaaatatc |
25590024 |
T |
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| Q |
208 |
taggtgtcttcaaac |
222 |
Q |
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| T |
25590025 |
taggtgtctccaaac |
25590039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 25599477 - 25599691
Alignment:
| Q |
8 |
ttgtgtcattcccgtaaaattcctctgattgttgatgaagctcacggtgcacatctaggatttcattctgaactgcctagctcagccctccagcaagggg |
107 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25599477 |
ttgtgtcattctcgtaaaattcctttgattgttgatgaagctcatggagcacatctaggattacattctgaactgcctagctcagccctccagcaagggg |
25599576 |
T |
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| Q |
108 |
ctgatctaactgtacagtctactcacaaggttctttgctctcttactcagtcatctatgctgcacatgtcaggtgacattgtagataaggaaaaaatatc |
207 |
Q |
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| T |
25599577 |
ctgatctaactgtacaatctactcacaaggttctttcctctcttactcaatcgtctatgctgcacatgtcgggcgacattgtagataaggaaaaaatatc |
25599676 |
T |
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| Q |
208 |
taggtgtcttcaaac |
222 |
Q |
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||||||||| ||||| |
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| T |
25599677 |
taggtgtctccaaac |
25599691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 48466154 - 48466216
Alignment:
| Q |
160 |
atctatgctgcacatgtcaggtgacattgtagataaggaaaaaatatctaggtgtcttcaaac |
222 |
Q |
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| T |
48466154 |
atctatgatgcacatgttggataacattgtagataaggagaaaatatttaggtatcttcaaac |
48466216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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