View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6480_low_17 (Length: 227)

Name: NF6480_low_17
Description: NF6480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6480_low_17
NF6480_low_17
[»] chr1 (7 HSPs)
chr1 (32-201)||(4016514-4016683)
chr1 (32-201)||(4014680-4014852)
chr1 (38-193)||(10219185-10219340)
chr1 (139-201)||(4571110-4571172)
chr1 (32-78)||(4571209-4571255)
chr1 (32-188)||(21855098-21855254)
chr1 (32-72)||(17563902-17563942)
[»] chr2 (4 HSPs)
chr2 (38-192)||(29571551-29571705)
chr2 (38-192)||(29580895-29581049)
chr2 (38-192)||(29578340-29578494)
chr2 (38-192)||(29610184-29610338)
[»] chr5 (1 HSPs)
chr5 (32-188)||(24330614-24330770)
[»] chr4 (1 HSPs)
chr4 (38-192)||(29945742-29945896)
[»] chr7 (4 HSPs)
chr7 (38-78)||(29921726-29921766)
chr7 (33-79)||(29881564-29881610)
chr7 (32-72)||(29476037-29476077)
chr7 (33-79)||(29872021-29872067)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 4016514 - 4016683
Alignment:
Q  32 aagagaaacttactttcaaacaattggaactaagctttcaacataattgttggcatcgatccaatatttatcattggtatttctattataggcagtagtt 131  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||  ||||||  |  |||||||  || |  | || ||||||||| ||||| ||||    
T  4016514 aagagaaacttactttcaaaaaattggaactaaactttcaacataatctttggcaaagtcccaatatacataaccgctagttctattattggcagcagtt 4016613  T
Q  132 gtacttgcaataatttctgttcgctttgctctattatctctcctgttaaagagaattgtttgggattcta 201  Q
     ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  4016614 ctacttgcaataatttctgttcgctttgctctattatctctcctattatagagaattgtttgggattcta 4016683  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 4014680 - 4014852
Alignment:
Q  32 aagagaaacttactttcaaacaattggaactaagctttcaacataattgttggcatcgatccaatatttatcattggtatttctattataggcagtagtt 131  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||  ||||||  |  |   |||  || |||| ||||||||  || |||| |||||    
T  4014680 aagagaaacttactttcaaaaaattggaactaagctttcaacataatctttggcaaagtcctggtatacataattgctatttctaaaatcggcaatagtt 4014779  T
Q  132 gtacttgcaataatttctgttcgctttgctctattatctctcctgtta---aagagaattgtttgggattcta 201  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |   | ||||||||||||||||||||    
T  4014780 gtacttgcaataatttctgttcgctttgctctattatgtctcctgtcatagaggagaattgtttgggattcta 4014852  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 193
Target Start/End: Complemental strand, 10219340 - 10219185
Alignment:
Q  38 aacttactttcaaacaattggaactaagctttcaacataattgttggcatcgatccaatatttatcattggtatttctattataggcagtagttgtactt 137  Q
    |||||||||| ||  |||||| ||||||||||||||||||| |||||||| | ||||||||  |  ||    |||||||||||    ||||||| |||||    
T  10219340 aacttacttttaaggaattgggactaagctttcaacataatcgttggcatggctccaatatacacgatcaccatttctattatcaatagtagttctactt 10219241  T
Q  138 gcaataatttctgttcgctttgctctattatctctcctgttaaagagaattgtttg 193  Q
    |||||||||| |||| |||||||| ||||||||||| ||||| |||||||||||||    
T  10219240 gcaataatttgtgtttgctttgctgtattatctctcatgttatagagaattgtttg 10219185  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 4571172 - 4571110
Alignment:
Q  139 caataatttctgttcgctttgctctattatctctcctgttaaagagaattgtttgggattcta 201  Q
    ||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  4571172 caataatttctgttcgctttgctctattatctctcctattataaagaattgtttgggattcta 4571110  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 4571255 - 4571209
Alignment:
Q  32 aagagaaacttactttcaaacaattggaactaagctttcaacataat 78  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  4571255 aagagaaacttactttcaaaaaattggaactaagctttcaacataat 4571209  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 188
Target Start/End: Original strand, 21855098 - 21855254
Alignment:
Q  32 aagagaaacttactttcaaacaattggaactaagctttcaacataattgttggcatcgatccaatatttatcattggtatttctattataggcagtagtt 131  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||  ||||||| |    ||| |  || || | || || |||||| || ||||| |    
T  21855098 aagagaaacttactttcaaaaacttggaactaagctttcaacataatcattggcatagtataaatctacatgatcgctagttgtattatcggtagtagct 21855197  T
Q  132 gtacttgcaataatttctgttcgctttgctctattatctctcctgttaaagagaatt 188  Q
     |||||||| |||||  || ||||| ||||||||||||||| || ||| ||||||||    
T  21855198 ttacttgcagtaattcttgctcgctctgctctattatctcttctattatagagaatt 21855254  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 17563902 - 17563942
Alignment:
Q  32 aagagaaacttactttcaaacaattggaactaagctttcaa 72  Q
    ||||| |||||||||||||| ||| ||||||||||||||||    
T  17563902 aagaggaacttactttcaaaaaataggaactaagctttcaa 17563942  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 29571551 - 29571705
Alignment:
Q  38 aacttactttcaaacaattggaactaagctttcaacataattgttggcatcgatccaatatttatcattggtatttctattataggcagtagttgtactt 137  Q
    ||||||||||||||  |||||||||||||||||||||||||   ||||||||  |||||||  || ||   || ||||||||| || |  || | ||| |    
T  29571551 aacttactttcaaaatattggaactaagctttcaacataatctatggcatcgtcccaatatgcattatctctagttctattatcggtaacaggtctacat 29571650  T
Q  138 gcaataatttctgttcgctttgctctattatctctcctgttaaagagaattgttt 192  Q
     ||||||||| ||||||||| | ||| ||||||||||| ||| ||||||||||||    
T  29571651 acaataatttatgttcgcttagttctgttatctctcctattatagagaattgttt 29571705  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 29580895 - 29581049
Alignment:
Q  38 aacttactttcaaacaattggaactaagctttcaacataattgttggcatcgatccaatatttatcattggtatttctattataggcagtagttgtactt 137  Q
    ||||||||||||||  |||||||||||||||||||||||||   ||||||||  |||||||  || ||   || ||||||||| || |  || | ||| |    
T  29580895 aacttactttcaaaatattggaactaagctttcaacataatctatggcatcgtcccaatatgcattatctctagttctattatcggtaacaggtctacat 29580994  T
Q  138 gcaataatttctgttcgctttgctctattatctctcctgttaaagagaattgttt 192  Q
     ||||||||| ||||||||| | ||| ||||||||||| ||| ||||||||||||    
T  29580995 acaataatttatgttcgcttagttctgttatctctcctattatagagaattgttt 29581049  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 29578340 - 29578494
Alignment:
Q  38 aacttactttcaaacaattggaactaagctttcaacataattgttggcatcgatccaatatttatcattggtatttctattataggcagtagttgtactt 137  Q
    ||||||||||||||  |||||||||||||||||||||||||   || |||||  |||||||  || ||   || ||||||||| || |  || | ||| |    
T  29578340 aacttactttcaaaatattggaactaagctttcaacataatctatgacatcgtcccaatatgcattatctctagttctattatcggtaacaggtctacat 29578439  T
Q  138 gcaataatttctgttcgctttgctctattatctctcctgttaaagagaattgttt 192  Q
     ||||||||| ||||||||| | ||| ||||||||||| ||| ||||||||||||    
T  29578440 acaataatttatgttcgcttagttctgttatctctcctattatagagaattgttt 29578494  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 29610184 - 29610338
Alignment:
Q  38 aacttactttcaaacaattggaactaagctttcaacataattgttggcatcgatccaatatttatcattggtatttctattataggcagtagttgtactt 137  Q
    ||||||||||||||  |||||||||||||||||||||||||   || |||||  |||||||  || ||   || ||||||||| || |  || | ||| |    
T  29610184 aacttactttcaaaatattggaactaagctttcaacataatctatgacatcgtcccaatatgcattatctctagttctattatcggtaacaggtctacat 29610283  T
Q  138 gcaataatttctgttcgctttgctctattatctctcctgttaaagagaattgttt 192  Q
     ||||||||| ||||||||| | ||| ||||||||||| ||| ||||||||||||    
T  29610284 acaataatttatgttcgcttagatctgttatctctcctattatagagaattgttt 29610338  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 188
Target Start/End: Original strand, 24330614 - 24330770
Alignment:
Q  32 aagagaaacttactttcaaacaattggaactaagctttcaacataattgttggcatcgatccaatatttatcattggtatttctattataggcagtagtt 131  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||  ||||||| |    ||| |  || || | || || |||||| || ||||| |    
T  24330614 aagagaaacttactttcaaaaacttggaactaagctttcaacataatcattggcatagtataaatctacatgatcgctagttgtattatcggtagtagct 24330713  T
Q  132 gtacttgcaataatttctgttcgctttgctctattatctctcctgttaaagagaatt 188  Q
     |||||||| |||||  || ||||| ||||||||||||||| || ||| ||||||||    
T  24330714 ttacttgcagtaattcttgctcgctctgctctattatctcttctattatagagaatt 24330770  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 192
Target Start/End: Complemental strand, 29945896 - 29945742
Alignment:
Q  38 aacttactttcaaacaattggaactaagctttcaacataattgttggcatcgatccaatatttatcattggtatttctattataggcagtagttgtactt 137  Q
    ||||||||||||||  |||||||||||||||||||||||||   ||||||||  |||||||  || ||   || |||||||||  | |  || | ||| |    
T  29945896 aacttactttcaaaatattggaactaagctttcaacataatctatggcatcgtcccaatatgcattatctctagttctattatcagtaacaggtctacat 29945797  T
Q  138 gcaataatttctgttcgctttgctctattatctctcctgttaaagagaattgttt 192  Q
     ||||||||| ||||||||| | ||| ||||||||||||||  ||||||||||||    
T  29945796 acaataatttatgttcgcttagttctgttatctctcctgttttagagaattgttt 29945742  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 29921726 - 29921766
Alignment:
Q  38 aacttactttcaaacaattggaactaagctttcaacataat 78  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  29921726 aacttactttcaaaaaattggaactaagctttcaacataat 29921766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 29881610 - 29881564
Alignment:
Q  33 agagaaacttactttcaaacaattggaactaagctttcaacataatt 79  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||||    
T  29881610 agaggaacttactttcaaaaaattgaaactaagctttcaacataatt 29881564  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 29476037 - 29476077
Alignment:
Q  32 aagagaaacttactttcaaacaattggaactaagctttcaa 72  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  29476037 aagagaaacttactttcaaaaaattgaaactaagctttcaa 29476077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 29872067 - 29872021
Alignment:
Q  33 agagaaacttactttcaaacaattggaactaagctttcaacataatt 79  Q
    |||| |||||||||||||| ||||| |||||| ||||||||||||||    
T  29872067 agaggaacttactttcaaaaaattgaaactaaactttcaacataatt 29872021  T

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