View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6480_low_5 (Length: 411)
Name: NF6480_low_5
Description: NF6480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6480_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 49511277 - 49511658
Alignment:
| Q |
19 |
aagctcttccaattagagttgctccaatggggttatcttgtttgacagtgaatataatgttggagattgaatgtgcagagtaaatgtgaaaggtttcgtt |
118 |
Q |
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| T |
49511277 |
aagctcttccaattagagttgctccaatggggttatcttgtttgacagtgaatataatgttggagattgaatgtgcagagtaaatgtgaaaggtttcgtt |
49511376 |
T |
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| Q |
119 |
ccatttggggctacctatcattctagttcttccaactcttgctttgtctaaatcaactgttgcatatagacccatcccaataatctgtgaaatgttttta |
218 |
Q |
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| T |
49511377 |
ccatttggggctacctatcattctagttcttccaactcttgctttgtctaaatcaactgttgcatatagacccatcccaataatctgtgaaatgttttta |
49511476 |
T |
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| Q |
219 |
aatgttgttaggtgttagaatgtataaagggaactttatgtgattagaaaaataatgaagtatgttacataattacattacatattatatagtcaacaag |
318 |
Q |
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| T |
49511477 |
aatgttgttaggtgttagaatgtataaagggaactttatgtgattagaaaaataatgaagtatgttacataattacattacatattatatagtcaacaag |
49511576 |
T |
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| Q |
319 |
gaaataaaataatatgtgaagatatacctctggcttgcattgccattgacaccgaaaacaactcttgacttgtgacagaatt |
400 |
Q |
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| T |
49511577 |
gaaataaaataatatgtgaagatatacctctggcttgcattgccattgacacagaaaacaactcttgacttgtgacagaatt |
49511658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 49522352 - 49522404
Alignment:
| Q |
132 |
cctatcattctagttcttccaactcttgctttgtctaaatcaactgttgcata |
184 |
Q |
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| T |
49522352 |
cctatcattctggttcgtccaacccttgctttatctaaatcaactgttgcata |
49522404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 49522227 - 49522287
Alignment:
| Q |
19 |
aagctcttccaattagagttgctccaatggggttatcttgtttgacagtgaatataatgtt |
79 |
Q |
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| T |
49522227 |
aagctcttcctattagagttgcaccaatcggattatcatctttgacagtgaatacaatgtt |
49522287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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