View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6480_low_7 (Length: 388)
Name: NF6480_low_7
Description: NF6480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6480_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 9 - 372
Target Start/End: Complemental strand, 22287349 - 22286986
Alignment:
| Q |
9 |
acatcatccatttcttgatacattttagcatcaccaagcttcttaatggtaacatgaaaactcgactcattatggcgaaacctcggctggtgagacgccc |
108 |
Q |
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| T |
22287349 |
acatcatccatttcttgatacattttagcatcaccaagcttcttaatggtaacatgaaaactcgactcattatggcgaaacctcggctggtgagacgccc |
22287250 |
T |
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| Q |
109 |
aatgaaaaagctctaaacaaactaacgggtcgcgttgattcgcaataacattgcgtaattcctcgtgagtaaaccgtgggaggagttgggattgtgcaaa |
208 |
Q |
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| T |
22287249 |
aatgaaaaagctctaaacaaactaacgggtcgcgttgattcgcaataacattgcgtaattcctccggtgtaaaccgtgggaggagttgggattgtgcaaa |
22287150 |
T |
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| Q |
209 |
ttgaaacttttcttggtctaaaacaggttggttggcttttaaaaaccggtttcgagctcgtcttctgtaagatcttgaaggggttttggttgaataatga |
308 |
Q |
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| T |
22287149 |
ttgaaacttttcttggtctaaaacaggtttgttggcttttaaaaaccggtttcgagctcgtcttctgtaagatcttgaaggggttttggttgaataataa |
22287050 |
T |
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| Q |
309 |
tgataagaattaaagctaataagtgaatttatctgaattgggtcattgagatgaaatagtgtag |
372 |
Q |
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| T |
22287049 |
tgataagaattaaagctaataagtgaatttatctgaattgggtcattgagatgaaatagtgtag |
22286986 |
T |
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