View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6481_high_3 (Length: 332)
Name: NF6481_high_3
Description: NF6481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6481_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 55958430 - 55958734
Alignment:
| Q |
14 |
ttcttcctcctccaaaagggatgtattcaaagttattattattactattcactttattaaaatcaaaatctttactgtcatgaaacctctcaggtataaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
55958430 |
ttcttcctcctccaaaagggatgtattcaaagttattattattactattcactttattaaaatcaaaatatttactgtcatgaaacctctcaggtataaa |
55958529 |
T |
|
| Q |
114 |
cttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaactatgttgcat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
55958530 |
cttctctgcatcataccaatatttgggatctcttcacattgcccaagcatttactaacacattagtctttattggtatttcatatccacctatgttgcat |
55958629 |
T |
|
| Q |
214 |
gcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatcattct |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
55958630 |
gcttccctgcattctcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatcactct |
55958729 |
T |
|
| Q |
314 |
catat |
318 |
Q |
| |
|
||||| |
|
|
| T |
55958730 |
catat |
55958734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 55954877 - 55955181
Alignment:
| Q |
14 |
ttcttcctcctccaaaagggatgtattcaaagttattattattactattcactttattaaaatcaaaatctttactgtcatgaaacctctcaggtataaa |
113 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||| |||||||||| |||| |||||||||||||||| | |||| |||| |||||| ||||||||||| |
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| T |
55954877 |
ttcttcctcccccaaaaggcatgtaatcaaagctattattattg---ttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaa |
55954973 |
T |
|
| Q |
114 |
cttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaactatgttgcat |
213 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
55954974 |
cttctttgcatcataccaatgtttgggatctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcaa |
55955073 |
T |
|
| Q |
214 |
gcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatcattct |
313 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||| |
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| T |
55955074 |
gcttccctgcattctcttggaagcaaagtaaaaggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactct |
55955173 |
T |
|
| Q |
314 |
catatatt |
321 |
Q |
| |
|
|||||||| |
|
|
| T |
55955174 |
catatatt |
55955181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 29 - 321
Target Start/End: Original strand, 41795658 - 41795949
Alignment:
| Q |
29 |
aagggatgtattcaaagttattattattactattcactttattaaaatcaaaatctttactgtcatgaaacctctcaggtataaacttctctgcatcata |
128 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||||| || ||||||||||| |
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|
| T |
41795658 |
aagggatgtattcaaagttat---tattactattcactttattaaattcaaaatctttactgtcctgaaacctcttatgtataaaattatctgcatcata |
41795754 |
T |
|
| Q |
129 |
ccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaactatgttgcatgcttccctgcattat |
228 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| |||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||| | |
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|
| T |
41795755 |
tcaatatttgggatctcttccgattgcccatgcatttactatcacactagtctttataggtatttcatatccacctatgttgcacgcttccctgcattct |
41795854 |
T |
|
| Q |
229 |
cttataagcaaagtagcaggtggatgtaac--ctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatcattctcatatatt |
321 |
Q |
| |
|
||| |||||||||| ||||||||||||| ||||| ||||||||||||||||| || ||||||| |||||| ||||||||| ||||||||||| |
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|
| T |
41795855 |
cttggaagcaaagtaaaaggtggatgtaacctctcattgtttctttgatcactgactttaagtaaccaagttcatgtagatcactctcatatatt |
41795949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 12268478 - 12268199
Alignment:
| Q |
14 |
ttcttcctcctccaaaagggatgtattcaaagttattattattactattcactttattaaaatcaaaatctttactgtcatgaaacctctcaggtataaa |
113 |
Q |
| |
|
||||||||||||||||||||||||| | |||| |||||| ||| ||||||||||||||||||| | || | ||||||||||||||||||||||| |
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|
| T |
12268478 |
ttcttcctcctccaaaagggatgtactgaaagctattatcatt------cactttattaaaatcaaaaccagtattatcatgaaacctctcaggtataaa |
12268385 |
T |
|
| Q |
114 |
cttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaactatgttgcat |
213 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| |||||||| ||||||| || | |||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
12268384 |
cttctctgcatcagaccaatgattgggatctcttccaattgcccatgcatttaatattaaattagtctttataggtatttcatatcctcctatgttgcat |
12268285 |
T |
|
| Q |
214 |
gcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttc |
299 |
Q |
| |
|
||||||||||||| |||| |||| | | | ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
12268284 |
gcttccctgcattctcttgtaagtattgcaccaggtgggtgtaacctcagggtttctttgatcactgacttcaagtaactaagttc |
12268199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 60 - 321
Target Start/End: Original strand, 12425247 - 12425508
Alignment:
| Q |
60 |
attcactttattaaaatcaaaatctttactgtcatgaaacctctcaggtataaacttctctgcatcataccaatatttgggatctcttcccattgcccaa |
159 |
Q |
| |
|
|||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||| |||||| |||||| || |||||||||||| |||||||| |
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|
| T |
12425247 |
attcactttattaaaatcaaaaccagtactatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccat |
12425346 |
T |
|
| Q |
160 |
gcatttactaacacattagtctttattggtatttcatatccaactatgttgcatgcttccctgcattatcttataagcaaagtagcaggtggatgtaacc |
259 |
Q |
| |
|
||||||| || | ||||| |||| ||||||||||||||| |||||||||| ||||||||||||| ||| || ||||| ||||||||||| ||||||| |
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|
| T |
12425347 |
gcatttaatattaagttagtttttaaaggtatttcatatccacctatgttgcacgcttccctgcattctctcatgagcaatgtagcaggtgggtgtaacc |
12425446 |
T |
|
| Q |
260 |
tcatagtttctttgatcactgaattcaagtaactaagttcttgtagatcattctcatatatt |
321 |
Q |
| |
|
||| ||||||||||||||| | |||||||| | ||||| ||||||||| ||||||||||| |
|
|
| T |
12425447 |
tcagggtttctttgatcactaacttcaagtacccaagtttatgtagatcactctcatatatt |
12425508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 7141706 - 7141631
Alignment:
| Q |
91 |
tcatgaaacctctcaggtataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcattta |
166 |
Q |
| |
|
|||| ||||||||| || |||||| |||| ||||||| ||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
7141706 |
tcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcattta |
7141631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 7154471 - 7154360
Alignment:
| Q |
96 |
aaacctctcaggtataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttca |
195 |
Q |
| |
|
||||||||| || || ||| |||| |||||| |||||||| ||||||||| ||| |||||| ||||||| | ||| ||||| ||| ||||||||||| |
|
|
| T |
7154471 |
aaacctctctggaatgaacatctcagcatcagtccaatattgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttca |
7154372 |
T |
|
| Q |
196 |
tatccaactatg |
207 |
Q |
| |
|
|| ||| ||||| |
|
|
| T |
7154371 |
taaccatctatg |
7154360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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