View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6481_high_7 (Length: 227)

Name: NF6481_high_7
Description: NF6481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6481_high_7
NF6481_high_7
[»] chr1 (6 HSPs)
chr1 (3-227)||(36526247-36526471)
chr1 (3-216)||(37923585-37923798)
chr1 (49-215)||(37871988-37872153)
chr1 (14-216)||(35051638-35051840)
chr1 (4-122)||(8237318-8237434)
chr1 (63-99)||(19023346-19023382)
[»] chr5 (5 HSPs)
chr5 (3-216)||(23269964-23270176)
chr5 (97-215)||(4430699-4430817)
chr5 (15-185)||(14964904-14965074)
chr5 (3-214)||(26917294-26917505)
chr5 (20-95)||(4431011-4431086)
[»] chr8 (1 HSPs)
chr8 (3-212)||(29468318-29468527)
[»] chr2 (8 HSPs)
chr2 (16-215)||(9252345-9252544)
chr2 (20-214)||(37490804-37490999)
chr2 (60-154)||(13018965-13019059)
chr2 (18-216)||(24588542-24588736)
chr2 (115-214)||(40728271-40728370)
chr2 (55-216)||(8295012-8295173)
chr2 (14-126)||(19920791-19920903)
chr2 (63-101)||(13923026-13923064)
[»] chr7 (3 HSPs)
chr7 (23-215)||(28283839-28284031)
chr7 (18-159)||(5460873-5461014)
chr7 (23-109)||(29443757-29443842)
[»] scaffold0305 (1 HSPs)
scaffold0305 (3-216)||(18608-18820)
[»] chr4 (5 HSPs)
chr4 (3-125)||(43000432-43000554)
chr4 (178-215)||(43381799-43381836)
chr4 (17-78)||(43381919-43381980)
chr4 (56-95)||(29135150-29135189)
chr4 (57-117)||(35762788-35762849)
[»] chr3 (7 HSPs)
chr3 (16-101)||(9738634-9738720)
chr3 (15-93)||(46107349-46107427)
chr3 (45-100)||(21330778-21330833)
chr3 (58-102)||(43059104-43059148)
chr3 (17-100)||(35529008-35529090)
chr3 (59-101)||(47798396-47798438)
chr3 (14-103)||(46016235-46016324)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 36526247 - 36526471
Alignment:
Q  3 atcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 102  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36526247 atcatgaactcgggaactagcataagataatgacgcccgagctaacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 36526346  T
Q  103 tgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36526347 tgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaa 36526446  T
Q  203 gttcgatagacaccctggaaaacct 227  Q
    |||||||||||||||||||||||||    
T  36526447 gttcgatagacaccctggaaaacct 36526471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 37923585 - 37923798
Alignment:
Q  3 atcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 102  Q
    ||||||| || |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37923585 atcatgatcttgggaactagcataagataatgacgccctaactaacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 37923684  T
Q  103 tgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaa 202  Q
    |||||||||||||||  |||||||||||| ||||| ||||| |||||||||||||||||||  ||||| |||||||| ||||||||||||||||||||||    
T  37923685 tgattcataagtgaaactttgcaagtattcagaattgcgccgaacatggaattggtgctgagattgcttgagatgccatcaaccacttgcttgcaatcaa 37923784  T
Q  203 gttcgatagacacc 216  Q
    |||| |||||||||    
T  37923785 gttctatagacacc 37923798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 37872153 - 37871988
Alignment:
Q  49 aagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaaca 148  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| |||||||  | | |||||  |  | | ||    
T  37872153 aagtgggaaacattatttgtttgtctcctaataaaacttatcttaaagttttgattattcagaagtgaagctttgcaaccaatcagaat-accacgagca 37872055  T
Q  149 tggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacac 215  Q
    |||||||| || |||  |||||||||||| ||| |||||||||||| ||||||| |||||| |||||    
T  37872054 tggaattgatgttgagattgctagagatgtcgtaaaccacttgcttacaatcaatttcgatggacac 37871988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 35051638 - 35051840
Alignment:
Q  14 gggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat-gattcataa 112  Q
    |||||||||||||| ||||||||| | | | |||||| ||| ||| |||||||  |||||| |||||||||||| ||||||||||||| | | ||| |||    
T  35051638 gggaactagcataaaataatgacgtcattgctaacaaatggccaatattattttcttgtcttctaatgaaacttttcttaaagttttggtaggttc-taa 35051736  T
Q  113 gtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgataga 212  Q
     ||||||||| ||| |||  | ||| ||| ||||| || |||||||| |||   | ||||  |||  |||||||||||||||| ||||||||| ||||||    
T  35051737 ctgaagtttttcaaatatcaataattgcgtcaaacttgaaattggtgttgagtctcctagttatgttgtcaaccacttgcttgtaatcaagtttgataga 35051836  T
Q  213 cacc 216  Q
    ||||    
T  35051837 cacc 35051840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 8237434 - 8237318
Alignment:
Q  4 tcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat 103  Q
    ||||||||  |||||| | ||||||||| || || ||||| |||||||| ||||| |||||||| |||||  |||||||||||||||||||| ||||| |    
T  8237434 tcatgaacatgggaaccaacataagatattgtcgtcctagctaacaagtcggcaatattatttgcttgtc--ctaatgaaacttatcttaaaattttggt 8237337  T
Q  104 gattcataagtgaagtttt 122  Q
     | |  |||||||||||||    
T  8237336 aaattctaagtgaagtttt 8237318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 19023346 - 19023382
Alignment:
Q  63 atttgtttgtctcctaatgaaacttatcttaaagttt 99  Q
    |||||||||||||||||  ||||||||||||||||||    
T  19023346 atttgtttgtctcctaacaaaacttatcttaaagttt 19023382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 23270176 - 23269964
Alignment:
Q  3 atcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 102  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  23270176 atcatgaacttgggaactagcataagataatgactccctagctaacaagtgagcaacattatttgcttgtcttctaatgaaacttatcttaaagttttga 23270077  T
Q  103 tgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaa 202  Q
    |||||||||||||||| ||||||||| || ||||| ||| | ||| |||| |||||| |||  |||||||||||| ||||||||| ||||||||||||||    
T  23270076 tgattcataagtgaagctttgcaagtgttcagaatagcgtcgaacgtggatttggtgttgagattgctagagatgtcgtcaacca-ttgcttgcaatcaa 23269978  T
Q  203 gttcgatagacacc 216  Q
    ||||||||||||||    
T  23269977 gttcgatagacacc 23269964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 4430817 - 4430699
Alignment:
Q  97 ttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgc 196  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||    
T  4430817 ttttgatgattcacaagtgaagttttgcaagtattcataatcgcgccaaacatgaaattggtgctgaagttgctagaaatgccgtcaaccacttacttgc 4430718  T
Q  197 aatcaagttcgatagacac 215  Q
    |||  ||||||||||||||    
T  4430717 aattcagttcgatagacac 4430699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 14965074 - 14964904
Alignment:
Q  15 ggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagt 114  Q
    |||||||| ||||||||||| |||||||  ||| ||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| |    
T  14965074 ggaactagtataagataatggcgccctaactaataagtgggcaacattatttgattgtctcttgatgaaacttatcttaaagttttgatgattcataaat 14964975  T
Q  115 gaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaac 185  Q
     || |||||||||| || | |||| ||   || ||  ||||||||||||| ||| |||||||| |||||||    
T  14964974 taaattttgcaagtgtttaaaatctcgttgaatataaaattggtgctgaaattgttagagatgtcgtcaac 14964904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 214
Target Start/End: Complemental strand, 26917505 - 26917294
Alignment:
Q  3 atcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaag-ttttg 101  Q
    |||||||||  ||| || ||||||||||||||||||||| | ||  |  ||||||||| |||||| |||||||||||| ||||||||||||||| |||||    
T  26917505 atcatgaacatggggacaagcataagataatgacgcccttgctagtagatgggcaacactatttgcttgtctcctaataaaacttatcttaaagtttttg 26917406  T
Q  102 atgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatca 201  Q
      ||||| ||||||||| ||||||| |||  ||||| ||| ||||||| |||||| || |||     ||||  |||||||||||||||||||||||||||    
T  26917405 tagattc-taagtgaagctttgcaaatatcaagaatagcgtcaaacattgaattgttgttgagtcccctagctatgccgtcaaccacttgcttgcaatca 26917307  T
Q  202 agttcgatagaca 214  Q
    |||||||||||||    
T  26917306 agttcgatagaca 26917294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 4431086 - 4431011
Alignment:
Q  20 tagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaa 95  Q
    ||||||||||||||  |||||||| ||||||||||| ||||||||||| || ||||||||| ||||||||||||||    
T  4431086 tagcataagataattccgccctagctaacaagtgggaaacattatttgcttctctcctaataaaacttatcttaaa 4431011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 29468318 - 29468527
Alignment:
Q  3 atcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 102  Q
    |||||||||| | |||||||||||| ||||||||  ||||| ||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29468318 atcatgaacttgagaactagcataacataatgacatcctagctaacaagtatgcaacattatttgtttgtctcataatgaaacttatcttaaagttttga 29468417  T
Q  103 tgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaa 202  Q
    |||||||||||||||| ||||||| |||| || || ||||| ||||||||  ||||||| ||||||||||||||||  ||||| ||||||||||||||||    
T  29468418 tgattcataagtgaagctttgcaaatattcaggattgcgccgaacatggacctggtgctaaagttgctagagatgcaatcaactacttgcttgcaatcaa 29468517  T
Q  203 gttcgataga 212  Q
    ||||||||||    
T  29468518 gttcgataga 29468527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 9252544 - 9252345
Alignment:
Q  16 gaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtg 115  Q
    ||||||| |||||||||| ||| ||  | |||||| |||| ||||||||| ||||||||  ||||||||||||| ||||||||||||||||||| |||||    
T  9252544 gaactaggataagataataacgtccaggctaacaaatgggtaacattattcgtttgtcttttaatgaaacttatgttaaagttttgatgattcaaaagtg 9252445  T
Q  116 aagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacac 215  Q
    ||| ||||| |  ||| ||||| ||||  |||||| |||||||||| |  ||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  9252444 aagctttgccaccattcagaatagcgctgaacatgaaattggtgcttagattgctagagatgccgtcaaccacttgcttacaatcaagtttgatagacac 9252345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 37490999 - 37490804
Alignment:
Q  20 tagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagt 119  Q
    |||||| ||||||||||| ||||| |||||||||| |||||||||||  |||||| |||||||||||||||| |||||||||||||||||  |||||||     
T  37490999 tagcatgagataatgacgtcctagctaacaagtggacaacattatttacttgtcttctaatgaaacttatctgaaagttttgatgattcagtagtgaagc 37490900  T
Q  120 tttgcaagtattgagaatcgcgccaa-acatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagaca 214  Q
    |||||||  ||| | |||   | ||| ||||| |||||||  |||  |||||||||||| ||||||| | |||||| |||||||||| ||||||||    
T  37490899 tttgcaatcattcaaaataatgtcaacacatgaaattggtattgagattgctagagatgtcgtcaacgatttgcttacaatcaagtttgatagaca 37490804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 13018965 - 13019059
Alignment:
Q  60 attatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaat 154  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||| | |||||| |||  ||  ||| ||||| ||||||||||||||||    
T  13018965 attatttgattgtctcctaatgaaacttatcttaaaattttgatgattcagatgtgaagctttataaccattaagaatagcgccaaacatggaat 13019059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 24588542 - 24588736
Alignment:
Q  18 actagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat-gattcataagtga 116  Q
    ||||||||||||||||||||||||   ||   | ||||||||| |||||| |||| | ||||| |||||||     |||||||| | ||||| |||||||    
T  24588542 actagcataagataatgacgccctttctagtgaatgggcaacactatttgattgtgttctaataaaacttac----aagttttgttagattc-taagtga 24588636  T
Q  117 agttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacacc 216  Q
    || ||| ||| |||  ||||| ||||||||||||||||||||| |||     ||||  ||| ||||||||||||||||||||||||||||||||||||||    
T  24588637 agctttacaaatatcaagaatagcgccaaacatggaattggtgttgagtcccctagttatgtcgtcaaccacttgcttgcaatcaagttcgatagacacc 24588736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 40728271 - 40728370
Alignment:
Q  115 gaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagaca 214  Q
    ||||||||||| || || || |||||| | | || |||  ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||    
T  40728271 gaagttttgcaggtgtttaggatcgcgtcgagcacggatatggtgctgaagttgctagagatgtcgtcaaatacttgcttgcaatcaagttcgatagaca 40728370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 216
Target Start/End: Complemental strand, 8295173 - 8295012
Alignment:
Q  55 gcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat-gattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaa 153  Q
    |||||| ||||| |||||||| |||| ||||||||||||||||||||   ||||| ||||||||| ||||||| |||  ||||   ||||||||||| ||    
T  8295173 gcaacactatttatttgtctcttaataaaacttatcttaaagttttggcagattc-taagtgaagctttgcaaatatcaagaacaacgccaaacatgaaa 8295075  T
Q  154 ttggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacacc 216  Q
    ||| || |||     | ||  ||||||| || |||||||||||||||||||||||||||||||    
T  8295074 ttgatgttgagtccccaagctatgccgtaaatcacttgcttgcaatcaagttcgatagacacc 8295012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 19920903 - 19920791
Alignment:
Q  14 gggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat-gattcataa 112  Q
    ||||||| | |||||||||||||| ||| | |||||| |||  |||| |||||| |||| |||||||||||| || |||||||||||||| ||||| |||    
T  19920903 gggaactggtataagataatgacgtccttgctaacaaatggcaaacactatttgcttgtttcctaatgaaacctagcttaaagttttgatagattc-taa 19920805  T
Q  113 gtgaagttttgcaa 126  Q
    |||| |||||||||    
T  19920804 gtgatgttttgcaa 19920791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 13923064 - 13923026
Alignment:
Q  63 atttgtttgtctcctaatgaaacttatcttaaagttttg 101  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  13923064 atttgcttgtttcctaatgaaacttatcttaaagttttg 13923026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 215
Target Start/End: Complemental strand, 28284031 - 28283839
Alignment:
Q  23 cataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagtttt 122  Q
    |||||||||||||| ||||   |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||     
T  28284031 cataagataatgacaccctgactaacaagtgaacatcattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcagaagtgaagctta 28283932  T
Q  123 gcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacac 215  Q
    |||   ||| ||||| | |   ||||| ||||  ||| |||  |||||||||||| | |||  ||||||||| | ||||||||| ||||||||    
T  28283931 gcagccattcagaatagtgttgaacatagaatcagtgttgagattgctagagatgtcatcaggcacttgcttacgatcaagttcaatagacac 28283839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 5461014 - 5460873
Alignment:
Q  18 actagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat-gattcataagtga 116  Q
    |||||||||||||||||| |  |||| ||||||||  |||||| |||||| ||||||||||||||||||||||||||||||||| |  ||||  ||| ||    
T  5461014 actagcataagataatgatgttctagctaacaagtcagcaacaatatttgcttgtctcctaatgaaacttatcttaaagttttggtaaattctcaag-ga 5460916  T
Q  117 agttttgcaagtattgagaatcgcgccaaacatggaattggtg 159  Q
    || ||||||||| |  ||||| ||||| |||||||||||||||    
T  5460915 agctttgcaagtctctagaatagcgccgaacatggaattggtg 5460873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 29443842 - 29443757
Alignment:
Q  23 cataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaa-cttatcttaaagttttgatgattca 109  Q
    ||||||||||| | ||||| | |||||||||  |||  ||||||| ||||||   ||||||| |||||||||||||||||||||||||    
T  29443842 cataagataataatgcccttgctaacaagtgaacaaatttatttgcttgtcta--aatgaaaacttatcttaaagttttgatgattca 29443757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 18608 - 18820
Alignment:
Q  3 atcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 102  Q
    ||||||||||  ||| ||||||| || |||||||  | | | |||||||||||||| ||||||| ||| | || ||||||||||| |||| || ||||||    
T  18608 atcatgaactttggagctagcatgaggtaatgacaacttggctaacaagtgggcaaaattatttctttttttcttaatgaaacttgtcttcaaattttga 18707  T
Q  103 tgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaa 202  Q
    ||||||| |||||||| |||||||  ||| | ||| ||   |||| ||||||||||| |||  || ||||| ||| ||||||||||||| || |||||||    
T  18708 tgattcagaagtgaagctttgcaaccattcaaaatagc-ataaacgtggaattggtgttgagatttctagatatgtcgtcaaccacttgtttacaatcaa 18806  T
Q  203 gttcgatagacacc 216  Q
    |||| |||||||||    
T  18807 gttcaatagacacc 18820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 43000432 - 43000554
Alignment:
Q  3 atcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttga 102  Q
    |||||||||| || || ||||||||||||||||| || |||  ||||| || | || ||| |||| |||||||||||| |||||||| ||||||||||||    
T  43000432 atcatgaacttggaaattagcataagataatgacaccttagcaaacaaatgagtaatattgtttgcttgtctcctaataaaacttatattaaagttttga 43000531  T
Q  103 tgattcataagtgaagttttgca 125  Q
    |  ||  ||||||||| ||||||    
T  43000532 ttttttttaagtgaagctttgca 43000554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 43381836 - 43381799
Alignment:
Q  178 ccgtcaaccacttgcttgcaatcaagttcgatagacac 215  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43381836 ccgtcaaccacttgcttgcaatcaagttcgatagacac 43381799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 43381980 - 43381919
Alignment:
Q  17 aactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctccta 78  Q
    ||||||||||||||||||||| ||| | |||||| || |||||| |||||||||||||||||    
T  43381980 aactagcataagataatgacgtccttgttaacaaatgagcaacactatttgtttgtctccta 43381919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 29135189 - 29135150
Alignment:
Q  56 caacattatttgtttgtctcctaatgaaacttatcttaaa 95  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  29135189 caacattatttatttgtctcctaacgaaacttatcttaaa 29135150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 35762849 - 35762788
Alignment:
Q  57 aacattatttgtttgtctcctaatgaaactta-tcttaaagttttgatgattcataagtgaa 117  Q
    ||||||||||||||||| | |||| ||| ||| | ||||||||||||||||||| |||||||    
T  35762849 aacattatttgtttgtcccataataaaatttaatattaaagttttgatgattcacaagtgaa 35762788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 9738634 - 9738720
Alignment:
Q  16 gaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatg-aaacttatcttaaagttttg 101  Q
    |||||| |||||||||||||||| |||| |||||| || ||||||||||||| ||||| ||||||| |||  |||||||||||||||    
T  9738634 gaactaacataagataatgacgctctagctaacaaatgagcaacattatttggttgtcacctaatgaaaaaatatcttaaagttttg 9738720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 46107427 - 46107349
Alignment:
Q  15 ggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatctta 93  Q
    ||||||| ||||| |||||||||| |||| |||||| || ||||||||||||  ||||| ||||||||||| |||||||    
T  46107427 ggaactaacataatataatgacgctctagctaacaaatgagcaacattatttacttgtcacctaatgaaacgtatctta 46107349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 21330778 - 21330833
Alignment:
Q  45 taacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagtttt 100  Q
    |||||| || |||||||||||| ||||||||| ||| |||||||||||||||||||    
T  21330778 taacaaatgagcaacattatttatttgtctccgaataaaacttatcttaaagtttt 21330833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 43059148 - 43059104
Alignment:
Q  58 acattatttgtttgtctcctaatgaaacttatcttaaagttttga 102  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||    
T  43059148 acattatttgtttgtcttataatgaaacttatcttaaaattttga 43059104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 35529008 - 35529090
Alignment:
Q  17 aactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagtttt 100  Q
    ||||| ||||||||||||||   |||| |||||| || ||||||| ||||||||||| | ||||||||||||| ||||| ||||    
T  35529008 aactaacataagataatgacattctagctaacaa-tgagcaacatcatttgtttgtcgcttaatgaaacttattttaaaatttt 35529090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 47798396 - 47798438
Alignment:
Q  59 cattatttgtttgtctcctaatgaaacttatcttaaagttttg 101  Q
    |||||||| |||||||| |||| ||||||||||||||||||||    
T  47798396 cattatttatttgtctcttaataaaacttatcttaaagttttg 47798438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 46016235 - 46016324
Alignment:
Q  14 gggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat 103  Q
    |||||| | ||||||||||||| || |||  |||||| || |||||||| |||| |||||  | |||||||||||| ||| |||||||||    
T  46016235 gggaacaaacataagataatgatgctctaactaacaaatgagcaacattgtttgattgtcctcaaatgaaacttatattatagttttgat 46016324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University