View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6481_high_8 (Length: 225)
Name: NF6481_high_8
Description: NF6481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6481_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 55955229 - 55955040
Alignment:
| Q |
17 |
gaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcagtgatcaaa |
116 |
Q |
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| T |
55955229 |
gaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcagtgatcaaa |
55955130 |
T |
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| Q |
117 |
gaaaccatgaggttacacccaccttttactttgcttccaagagaatgcagggaagcgtgcaacatagatggatatgaaataccaataaag |
206 |
Q |
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| T |
55955129 |
gaaaccatgaggttacacccaccttttactttgcttccaagagaatgcagggaagcttgcaacatagatggatatgaaataccaataaag |
55955040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 55958785 - 55958596
Alignment:
| Q |
17 |
gaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcagtgatcaaa |
116 |
Q |
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| T |
55958785 |
gaagaaggcacaatctgaaataagagaaacctttaaaggtaaaaagagaacatatgagagtgatctacaagaacttagttacttgaattcagtgatcaaa |
55958686 |
T |
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| Q |
117 |
gaaaccatgaggttacacccaccttttactttgcttccaagagaatgcagggaagcgtgcaacatagatggatatgaaataccaataaag |
206 |
Q |
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| T |
55958685 |
gaaactatgaggttacatccacctgctactttgcttataagagaatgcagggaagcatgcaacataggtggatatgaaataccaataaag |
55958596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 41795957 - 41795806
Alignment:
| Q |
57 |
aaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcagtgatcaaagaaaccatgag--gttacacccaccttttactttgcttcc |
154 |
Q |
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| T |
41795957 |
aaaaagagaatatatgagagtgatctacatgaacttggttacttaaagtcagtgatcaaagaaacaatgagaggttacatccaccttttactttgcttcc |
41795858 |
T |
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| Q |
155 |
aagagaatgcagggaagcgtgcaacatagatggatatgaaataccaataaag |
206 |
Q |
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| T |
41795857 |
aagagaatgcagggaagcgtgcaacataggtggatatgaaatacctataaag |
41795806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 12425556 - 12425374
Alignment:
| Q |
17 |
gaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcagtgatcaaa |
116 |
Q |
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|||||| |||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| | |||||||||| |||||||||| |
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| T |
12425556 |
gaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttagtgatcaaa |
12425457 |
T |
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| Q |
117 |
gaaaccatgaggttacacccaccttttactttgcttccaagagaatgcagggaagcgtgcaacatagatggatatgaaatacc |
199 |
Q |
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| T |
12425456 |
gaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacataggtggatatgaaatacc |
12425374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 12268132 - 12268318
Alignment:
| Q |
20 |
gaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcagtgatcaaagaa |
119 |
Q |
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|||||||||| | ||||||||||||| | |||||| || |||||||| ||||| |||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
12268132 |
gaaagcacaagctgaaataagagaagtttgtaaaggtaagaagagaatttatgaaagtgatttgcatgaacttagttacttgaagtcagtgatcaaagaa |
12268231 |
T |
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| Q |
120 |
accatgaggttacacccaccttttactttgcttccaagagaatgcagggaagcgtgcaacatagatggatatgaaataccaataaag |
206 |
Q |
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| T |
12268232 |
accctgaggttacacccacctggtgcaatacttacaagagaatgcagggaagcatgcaacataggaggatatgaaatacctataaag |
12268318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 7154255 - 7154319
Alignment:
| Q |
77 |
tgatctacatgaacttagttacttgaagtcagtgatcaaagaaaccatgaggttacacccacctt |
141 |
Q |
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| T |
7154255 |
tgatctaaatgaactaacttactttaagttagtgatcaaagaaacaatgaggttacacccacctt |
7154319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 7141496 - 7141549
Alignment:
| Q |
88 |
aacttagttacttgaagtcagtgatcaaagaaaccatgaggttacacccacctt |
141 |
Q |
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|||| |||||||| |||| ||||||||||||||| |||||||||||||||||| |
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| T |
7141496 |
aactaagttacttaaagttagtgatcaaagaaacattgaggttacacccacctt |
7141549 |
T |
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