View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6481_high_9 (Length: 211)
Name: NF6481_high_9
Description: NF6481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6481_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 51030683 - 51030503
Alignment:
| Q |
14 |
cacagaattagatgcatttcaatcagctccattgagacatagacatccttgggagcttatgatgggaaatattagtaaaggcaatgtttgtgttgctgga |
113 |
Q |
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| T |
51030683 |
cacagaattagatgcatttcaatcagctccattgagacatagacatccttgggagcttatgatgggaaatattagtaaaggcaatgtttgtgttgctgga |
51030584 |
T |
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| Q |
114 |
gatgctttacaccctatgacacctgatcttggtcaaggggggtgttctgctttagaggatggagtggttttagcaaggtgt |
194 |
Q |
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| T |
51030583 |
gatgctttacaccctatgacacctgatcttggtcaaggggggtgttctgctttagaggatggagtggttttagcaaggtgt |
51030503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 51063435 - 51063255
Alignment:
| Q |
14 |
cacagaattagatgcatttcaatcagctccattgagacatagacatccttgggagcttatgatgggaaatattagtaaaggcaatgtttgtgttgctgga |
113 |
Q |
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| T |
51063435 |
cacagaattagatgcatttcaatcagctccattgagacatagacatccttgggagcttatgatgggaaatattagtaaaggcaatgtttgtgttgctgga |
51063336 |
T |
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| Q |
114 |
gatgctttacaccctatgacacctgatcttggtcaaggggggtgttctgctttagaggatggagtggttttagcaaggtgt |
194 |
Q |
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| T |
51063335 |
gatgctttacaccctatgacacctgatcttggtcaaggggggtgttctgctttagaggatggagtggttttagcaaggtgt |
51063255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 51069003 - 51068824
Alignment:
| Q |
15 |
acagaattagatgcatttcaatcagctccattgagacatagacatccttgggagcttatgatgggaaatattagtaaaggcaatgtttgtgttgctggag |
114 |
Q |
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| T |
51069003 |
acagatttagatgctttccattcagctccattgagatatagacatccttgggagcttataatgggaaatattagtaaaggaaatgtttgtgttgctggag |
51068904 |
T |
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| Q |
115 |
atgctttacaccctatgacacctgatcttggtcaaggggggtgttctgctttagaggatggagtggttttagcaaggtgt |
194 |
Q |
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| T |
51068903 |
atgctttacaccctatgacacctgatcttggtcaaggggggtgttctgctttagaggatggggtggttttagcaaggtgt |
51068824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 51034954 - 51034782
Alignment:
| Q |
21 |
ttagatgcatttcaatcagctccattgagacatagacatccttgggagcttatgatgggaaatattagtaaaggcaatgtttgtgttgctggagatgctt |
120 |
Q |
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|||||||| || || ||||||||||||||| |||||||||||||||| || || |||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
51034954 |
ttagatgctttacattcagctccattgagatatagacatccttgggaactcataatgggaaacattagtaaaaacaatgtttgtgttgctggagatgctt |
51034855 |
T |
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| Q |
121 |
tacaccctatgacacctgatcttggtcaaggggggtgttctgctttagaggatggagtggttttagcaaggtg |
193 |
Q |
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| T |
51034854 |
tgcacccaatggcaccttatcttgcccaaggggggtgttgtgctttagaggatggggtggttttagcaaggtg |
51034782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 40617985 - 40618156
Alignment:
| Q |
22 |
tagatgcatttcaatcagctccattgagacatagacatccttgggagcttatgatgggaaatattagtaaaggcaatgtttgtgttgctggagatgcttt |
121 |
Q |
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||||||| || || ||||||||||||||| ||||| |||| |||||||| || |||||||||||||| ||||| ||||||||||||| ||| |||||||| |
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| T |
40617985 |
tagatgctttccattcagctccattgagatatagaaatccatgggagctcataatgggaaatattagcaaaggaaatgtttgtgttgttggtgatgcttt |
40618084 |
T |
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| Q |
122 |
acaccctatgacacctgatcttggtcaaggggggtgttctgctttagaggatggagtggttttagcaaggtg |
193 |
Q |
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|||| ||||| |||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
40618085 |
acactctatggcacctgatcttgcccaaggggggtgttctgctttagaagatggggtggtattagcaaggtg |
40618156 |
T |
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