View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6481_low_1 (Length: 623)
Name: NF6481_low_1
Description: NF6481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6481_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 52391490 - 52391653
Alignment:
| Q |
1 |
aacataaaaaatttagcctccaatcatcattagtttttgtaatatcactaataagattccctcttcaagttggaacaggaattctgttccaattttgaga |
100 |
Q |
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| T |
52391490 |
aacataaaaaatttagcctccaatcatcattagtttttgtaatatcactaataagattccctcttcaagttggaac------cctgttccaattttgaga |
52391583 |
T |
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| Q |
101 |
gtttaaaaggtatgagaagggatggcttcagaggtggaaaatataggagggaatgtggaaatcttgtaca |
170 |
Q |
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| T |
52391584 |
gtttgaaaggtatgagaagggatgacttcagagttggaaaatataggagggaatgtggaaatcttgtaca |
52391653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 52393037 - 52393099
Alignment:
| Q |
209 |
acaagattaaatgacgaagcatagaagtacttttactaaaagataagactagttgtttagcag |
271 |
Q |
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| T |
52393037 |
acaagattaaatgacgaagcatagaagtacttttactaaaagataagactagttgtttagcag |
52393099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 52393122 - 52393166
Alignment:
| Q |
313 |
agacactagaggatgcaatttgccaatagaactagggcaagacaa |
357 |
Q |
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| T |
52393122 |
agacactagaggatgcaatttgccaatagaactagggcaagacaa |
52393166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 364 - 601
Target Start/End: Complemental strand, 8504716 - 8504479
Alignment:
| Q |
364 |
gttgagaaatgtgctacctccggaggtgtctacgttatgtgtgatgtgcaatgcgaaggaggaatcgacgcttcatctctttttacattgtgatgtagca |
463 |
Q |
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| T |
8504716 |
gttgaggaatgtgctaccgccggaggtttctccgttgtgtgtcatgtgtaatctaaaggaggaatcggcgctacatcttttcttacattgtgatgtggcg |
8504617 |
T |
|
| Q |
464 |
agt-tgggtatggcttaagttagatgttatggttgaattgtagtttcctcacacctccaaacttctttattcattgggaatgttggagtgccggaggaaa |
562 |
Q |
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| T |
8504616 |
tgtgcggttttggctcaaatta-atggtgtggttgaatttttggtttttaacccctccaaatttcgttattcattgggaatgttggagtgtagggggtaa |
8504518 |
T |
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| Q |
563 |
ttccaaaaaattaactaagggaatgtggttaatttggca |
601 |
Q |
| |
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| T |
8504517 |
ttcaaaaaaggtaacaaaaggcttgtggctaatttggca |
8504479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 551
Target Start/End: Complemental strand, 1330533 - 1330501
Alignment:
| Q |
519 |
ccaaacttctttattcattgggaatgttggagt |
551 |
Q |
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| T |
1330533 |
ccaaatttctttattcattgggaatgttggagt |
1330501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 356 - 601
Target Start/End: Original strand, 47476232 - 47476476
Alignment:
| Q |
356 |
aatcttgggttgagaaatgtgctacctccggaggtgtctacgttatgtgtgatgtgcaatgcgaaggaggaatcgacgcttcatctctttttacattgtg |
455 |
Q |
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| T |
47476232 |
aatcttgcgttgaggaatgtgttaccaccggaagcgtctacgttatgtgtgatgtgcaatgtgaaggaagaatcggcgttacacctctttctacattgtg |
47476331 |
T |
|
| Q |
456 |
atgtagcaagttgggtatggcttaagttagatgttatggttgaattgtagtttcctcacacctccaaacttctttattcattgggaatgttggagtgccg |
555 |
Q |
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| T |
47476332 |
acgttgcggttttggtgtggcgtacttt-gatgatgtggttgaattgtagctttttcacacctccaaatttctttgttcattgggaatgttggagtgttg |
47476430 |
T |
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| Q |
556 |
gaggaaattccaaaaaattaactaagggaatgtggttaatttggca |
601 |
Q |
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| T |
47476431 |
ggggaaattctaaaaaagttaccaaaggattttggttaatttggca |
47476476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 552
Target Start/End: Complemental strand, 43073956 - 43073923
Alignment:
| Q |
519 |
ccaaacttctttattcattgggaatgttggagtg |
552 |
Q |
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| T |
43073956 |
ccaaacttgtttattcattgggaatgttggagtg |
43073923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 552
Target Start/End: Complemental strand, 42773916 - 42773880
Alignment:
| Q |
516 |
cctccaaacttctttattcattgggaatgttggagtg |
552 |
Q |
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| T |
42773916 |
cctccaaacctctttattcattgggagtgttggagtg |
42773880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 558
Target Start/End: Original strand, 10430342 - 10430381
Alignment:
| Q |
519 |
ccaaacttctttattcattgggaatgttggagtgccggag |
558 |
Q |
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| T |
10430342 |
ccaaatttgtttattcattgggaatgttggagtgccggag |
10430381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 416
Target Start/End: Complemental strand, 40931846 - 40931796
Alignment:
| Q |
366 |
tgagaaatgtgctacctccggaggtgtctacgttatgtgtgatgtgcaatg |
416 |
Q |
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| T |
40931846 |
tgaggaatgtcctacctctggaggtgtctacgttatgtgtaatgtgtaatg |
40931796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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