View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6481_low_4 (Length: 395)
Name: NF6481_low_4
Description: NF6481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6481_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 8139042 - 8139409
Alignment:
| Q |
1 |
acagttctaaagtttctgtggctctcatctaattgttt-atgtatgcactatcagttaatacatggctgactttggaatgatgtctcagttttgtataaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8139042 |
acagttctaaagtttctgtggctctcatctaattgttttatgtatgcactatcagttaatacatggctgactttggaattatgtctcagttttgtataaa |
8139141 |
T |
|
| Q |
100 |
tgatgaatctatgctttggaatgatggatgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatctttctcattt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8139142 |
tgatgaatctatgctttggaatgatggatgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatctttctcattt |
8139241 |
T |
|
| Q |
200 |
atttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgttgannnnnnnnnnnnnnnn |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8139242 |
atttaaaaatcttgatcatttatttctgcaatcatgatcatttctatgaatgatgaatctgtgtttttgaagcgcatctgttgatttttttt-------- |
8139333 |
T |
|
| Q |
300 |
attgagtctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctcttgtatgagtcttg |
376 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8139334 |
-tttagtctttgttactgaatgcatgcttgaatatcactgtttttggaatgatgtctctgctcttgtatgagtcttg |
8139409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 181 - 376
Target Start/End: Complemental strand, 7499701 - 7499515
Alignment:
| Q |
181 |
gtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgt |
280 |
Q |
| |
|
||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
7499701 |
gtaaaaatcttaatcatttatctaaaaatctttatcatttatttctgcaatcatgatcacttctatgaatgatgaatctgtg-ttttgaagctcatctgt |
7499603 |
T |
|
| Q |
281 |
tgannnnnnnnnnnnnnnnattgagtctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctcttgtatgagtcttg |
376 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
7499602 |
tgattttttttt--------ttgagtctttgttactgaatgcatgcttgaacatcactgtttttggaatgatgtttctgctcttttatgagtcttg |
7499515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 263
Target Start/End: Complemental strand, 7503107 - 7502967
Alignment:
| Q |
128 |
tgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatct---ttctcatttatttaaaaatcttgatcatttattt |
224 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| | | |||||||| ||||||| |||||||||||||| |
|
|
| T |
7503107 |
tgtcccagttttttatgtttcttgatcattaagtaaaaatcctgatcatttatgtaaaaatatcattaatcatttatgtaaaaatattgatcatttattt |
7503008 |
T |
|
| Q |
225 |
ctgcaatc--atgatcatttccatgaatgatgaatctgtgt |
263 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
7503007 |
ctgcaatcatatgatcacttctatgaatgatgaatctgtgt |
7502967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 7499820 - 7499722
Alignment:
| Q |
1 |
acagttctaaagtttctgtggctctca-------tctaattgtttatgtatgcactatcagttaatacatggctgactttggaatgatgtctcagtttt |
92 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
7499820 |
acagttctaaagtttctgtggctctgaagtctgatctaattgtttatatatgcactatctgttaatacatggctggttttagaatgatgtctcagtttt |
7499722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 7502928 - 7502878
Alignment:
| Q |
306 |
tctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtct |
356 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
7502928 |
tctttgttactgattgcatgcttggatatcactgtttttggaatgatgtct |
7502878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 7503160 - 7503119
Alignment:
| Q |
221 |
atttctgcaatcatgatcatttccatgaatgatgaatctgtg |
262 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
7503160 |
atttctgcaatcatgatcacttctatgaatgatgaatttgtg |
7503119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University